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Merge pull request #39 from FlyBase/release_2021-03-10
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release files 2021-03-10
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@Clare72
Clare72 authored Mar 10, 2021
2 parents 65467f3 + 4946122 commit 8666327
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Showing 36 changed files with 76,603 additions and 55,190 deletions.
15,223 changes: 8,842 additions & 6,381 deletions fbdv-base.json
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12 changes: 8 additions & 4 deletions fbdv-base.obo
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Original file line number Diff line number Diff line change
@@ -1,6 +1,6 @@
format-version: 1.2
data-version: fbdv/releases/2021-01-13/fbdv-base.owl
date: 13:01:2021 12:25
data-version: fbdv/releases/2021-03-10/fbdv-base.owl
date: 10:03:2021 10:38
subsetdef: gocheck_do_not_annotate "Term not to be used for direct annotation"
subsetdef: gocheck_do_not_manually_annotate "Term not to be used for direct manual annotation"
subsetdef: goslim_aspergillus "Aspergillus GO slim"
Expand Down Expand Up @@ -30,7 +30,7 @@ property_value: IAO:0000700 FBdv:00000000
property_value: IAO:0000700 FBdv:00005259
property_value: IAO:0000700 FBdv:00007013
property_value: IAO:0000700 FBdv:00007024
property_value: owl:versionInfo "2021-01-13" xsd:string
property_value: owl:versionInfo "2021-03-10" xsd:string

[Term]
id: FBdv:00000000
Expand Down Expand Up @@ -326,14 +326,15 @@ comment: Temporal ordering number - 10.
is_a: FBdv:00005259 ! developmental stage
relationship: immediately_preceded_by FBdv:00005287 ! unfertilized egg stage
relationship: substage_of FBdv:00005286 ! egg stage
relationship: substage_of FBdv:00005289 ! embryonic stage

[Term]
id: FBdv:00005289
name: embryonic stage
def: "The stage of the Drosophila life-cycle from fertilization to hatching." [FBC:DOS]
comment: Temporal ordering number - 20.
is_a: FBdv:00007012 ! life stage
relationship: immediately_preceded_by FBdv:00005288 ! fertilized egg stage
relationship: immediately_preceded_by FBdv:00005287 ! unfertilized egg stage

[Term]
id: FBdv:00005290
Expand Down Expand Up @@ -779,6 +780,7 @@ def: "The first larval instar begins at hatching and ends at the first larval mo
comment: Temporal ordering number - 410.
synonym: "first instar larva" EXACT []
synonym: "L1" EXACT []
xref: UBERON:8000000
is_a: FBdv:00007012 ! life stage
relationship: immediately_preceded_by FBdv:00005289 ! embryonic stage
relationship: immediately_preceded_by FBdv:00005333 ! late embryonic stage
Expand All @@ -793,6 +795,7 @@ def: "The second larval instar begins at the first larval molt and ends at the s
comment: Temporal ordering number - 420.
synonym: "L2" EXACT []
synonym: "second instar larva" EXACT []
xref: UBERON:8000001
is_a: FBdv:00007012 ! life stage
relationship: immediately_preceded_by FBdv:00005337 ! first instar larval stage
relationship: substage_of FBdv:00005336 ! larval stage
Expand All @@ -804,6 +807,7 @@ def: "The third larval instar begins at the second larval molt and ends at pupar
comment: Temporal ordering number - 430.
synonym: "L3" EXACT []
synonym: "third instar larva" RELATED []
xref: UBERON:8000002
is_a: FBdv:00007012 ! life stage
relationship: immediately_preceded_by FBdv:00005338 ! second instar larval stage
relationship: substage_of FBdv:00005336 ! larval stage
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41 changes: 13 additions & 28 deletions fbdv-base.owl
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Original file line number Diff line number Diff line change
Expand Up @@ -12,7 +12,7 @@
xmlns:terms="http://purl.org/dc/terms/"
xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/fbdv/fbdv-base.owl">
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/fbdv/releases/2021-01-13/fbdv-base.owl"/>
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/fbdv/releases/2021-03-10/fbdv-base.owl"/>
<obo:IAO_0000700 rdf:resource="http://purl.obolibrary.org/obo/FBdv_00000000"/>
<obo:IAO_0000700 rdf:resource="http://purl.obolibrary.org/obo/FBdv_00005259"/>
<obo:IAO_0000700 rdf:resource="http://purl.obolibrary.org/obo/FBdv_00007013"/>
Expand All @@ -26,10 +26,10 @@
<dc:type rdf:resource="http://purl.obolibrary.org/obo/IAO_8000001"/>
<terms:license rdf:datatype="http://www.w3.org/2001/XMLSchema#string">https://creativecommons.org/licenses/by/3.0/</terms:license>
<oboInOwl:NamespaceIdRule rdf:datatype="http://www.w3.org/2001/XMLSchema#string">* FBdv:$sequence(8,7000,10000)$</oboInOwl:NamespaceIdRule>
<oboInOwl:date rdf:datatype="http://www.w3.org/2001/XMLSchema#string">13:01:2021 12:25</oboInOwl:date>
<oboInOwl:date rdf:datatype="http://www.w3.org/2001/XMLSchema#string">10:03:2021 10:38</oboInOwl:date>
<oboInOwl:default-namespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">FlyBase_development_CV</oboInOwl:default-namespace>
<oboInOwl:hasOBOFormatVersion rdf:datatype="http://www.w3.org/2001/XMLSchema#string">1.2</oboInOwl:hasOBOFormatVersion>
<owl:versionInfo rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2021-01-13</owl:versionInfo>
<owl:versionInfo rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2021-03-10</owl:versionInfo>
</owl:Ontology>


Expand Down Expand Up @@ -200,30 +200,6 @@



<!-- http://purl.org/dc/elements/1.1/creator -->

<owl:AnnotationProperty rdf:about="http://purl.org/dc/elements/1.1/creator"/>



<!-- http://purl.org/dc/elements/1.1/description -->

<owl:AnnotationProperty rdf:about="http://purl.org/dc/elements/1.1/description"/>



<!-- http://purl.org/dc/elements/1.1/title -->

<owl:AnnotationProperty rdf:about="http://purl.org/dc/elements/1.1/title"/>



<!-- http://purl.org/dc/terms/license -->

<owl:AnnotationProperty rdf:about="http://purl.org/dc/terms/license"/>



<!-- http://www.geneontology.org/formats/oboInOwl#NamespaceIdRule -->

<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#NamespaceIdRule">
Expand Down Expand Up @@ -1497,6 +1473,12 @@
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/FBdv_00005286"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/FBdv_00018001"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/FBdv_00005289"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0002087"/>
Expand All @@ -1518,7 +1500,7 @@
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0002087"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/FBdv_00005288"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/FBdv_00005287"/>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">The stage of the Drosophila life-cycle from fertilization to hatching.</obo:IAO_0000115>
Expand Down Expand Up @@ -3079,6 +3061,7 @@
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">The first larval instar begins at hatching and ends at the first larval molt. Anterior spiracles are not yet present; posterior spiracles have two openings each. Salivary glands are very small and all cells are uniform in size. Mouth hooks typically have one tooth. Duration at 25 degrees C: approximately 25 hours (24-49 hours after egg laying; 0-25 hours after hatching).</obo:IAO_0000115>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">UBERON:8000000</oboInOwl:hasDbXref>
<oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">L1</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">first instar larva</oboInOwl:hasExactSynonym>
<oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">FlyBase_development_CV</oboInOwl:hasOBONamespace>
Expand Down Expand Up @@ -3112,6 +3095,7 @@
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">The second larval instar begins at the first larval molt and ends at the second larval molt. Larvae are actively feeding and crawling in the food. Distinct anterior spiracles are present as enlargements at the end of the tracheal trunk, but not open to the outside; posterior spiracles have three openings each, and four groups of small unbranched hairs. The salivary glands extend to the first abdominal segment, and have cells that are uniform in size. Mouth hooks typically have two or three teeth. Duration at 25 degrees C: approximately 23 hours (49-72 hours after egg laying; 25-48 hours after hatching).</obo:IAO_0000115>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">UBERON:8000001</oboInOwl:hasDbXref>
<oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">L2</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">second instar larva</oboInOwl:hasExactSynonym>
<oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">FlyBase_development_CV</oboInOwl:hasOBONamespace>
Expand Down Expand Up @@ -3145,6 +3129,7 @@
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">The third larval instar begins at the second larval molt and ends at puparium formation. Anterior spiracles are open to the outside; posterior spiracles have three openings each, and four groups of large branched hairs. The salivary glands extend to the second abdominal segment, with cells larger in the posterior than in the anterior of the gland. Mouth hooks typically have 9-12 teeth. About 24 hours before pupariation (at 25 degree C), larvae stop feeding and climb away from their food. Duration at 25 degrees C: approximately 48 hours (72-120 hours after egg laying; 48-96 hours after hatching).</obo:IAO_0000115>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">UBERON:8000002</oboInOwl:hasDbXref>
<oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">L3</oboInOwl:hasExactSynonym>
<oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">FlyBase_development_CV</oboInOwl:hasOBONamespace>
<oboInOwl:hasRelatedSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">third instar larva</oboInOwl:hasRelatedSynonym>
Expand Down
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