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Merge pull request #47 from FlyBase/release_2021-08-31
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Release 2021-08-31
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@Clare72
Clare72 authored Aug 31, 2021
2 parents e4021cc + 95ae0b0 commit f2a80e7
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100 changes: 3 additions & 97 deletions fbdv-base.json
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Expand Up @@ -3218,7 +3218,7 @@
},
{
"pred": "http://www.geneontology.org/formats/oboInOwl#date",
"val": "05:07:2021 10:41"
"val": "31:08:2021 09:05"
},
{
"pred": "http://www.geneontology.org/formats/oboInOwl#default-namespace",
Expand All @@ -3230,64 +3230,14 @@
},
{
"pred": "http://www.w3.org/2002/07/owl#versionInfo",
"val": "2021-07-05"
"val": "2021-08-31"
}
],
"subsets": [],
"version": "http://purl.obolibrary.org/obo/fbdv/releases/2021-07-05/fbdv-base.json",
"version": "http://purl.obolibrary.org/obo/fbdv/releases/2021-08-31/fbdv-base.json",
"xrefs": []
},
"nodes": [
{
"id": "http://purl.obolibrary.org/obo/BFO_0000051",
"lbl": "has_part",
"meta": {
"basicPropertyValues": [
{
"pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace",
"val": "relationship"
},
{
"pred": "http://www.geneontology.org/formats/oboInOwl#shorthand",
"val": "has_part"
}
],
"xrefs": [
{
"val": "BFO:0000051"
},
{
"val": "OBO_REL:has_part"
}
]
},
"type": "PROPERTY"
},
{
"id": "http://purl.obolibrary.org/obo/BFO_0000062",
"lbl": "preceded_by",
"meta": {
"basicPropertyValues": [
{
"pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace",
"val": "relationship"
},
{
"pred": "http://www.geneontology.org/formats/oboInOwl#shorthand",
"val": "preceded_by"
}
],
"xrefs": [
{
"val": "BFO:0000062"
},
{
"val": "OBO_REL:preceded_by"
}
]
},
"type": "PROPERTY"
},
{
"id": "http://purl.obolibrary.org/obo/FBdv_00000000",
"lbl": "Drosophila life",
Expand Down Expand Up @@ -8619,50 +8569,6 @@
},
"type": "PROPERTY"
},
{
"id": "http://purl.obolibrary.org/obo/RO_0002090",
"lbl": "ends_at_start_of",
"meta": {
"basicPropertyValues": [
{
"pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace",
"val": "FlyBase_development_CV"
},
{
"pred": "http://www.geneontology.org/formats/oboInOwl#shorthand",
"val": "ends_at_start_of"
}
],
"xrefs": [
{
"val": "RO:0002090"
}
]
},
"type": "PROPERTY"
},
{
"id": "http://purl.obolibrary.org/obo/RO_0002131",
"lbl": "overlaps",
"meta": {
"basicPropertyValues": [
{
"pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace",
"val": "FlyBase_development_CV"
},
{
"pred": "http://www.geneontology.org/formats/oboInOwl#shorthand",
"val": "overlaps"
}
],
"xrefs": [
{
"val": "RO:0002131"
}
]
},
"type": "PROPERTY"
},
{
"id": "http://purl.obolibrary.org/obo/fbdv#systematic_synonym",
"lbl": "Systematic synonym",
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30 changes: 3 additions & 27 deletions fbdv-base.obo
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Original file line number Diff line number Diff line change
@@ -1,6 +1,6 @@
format-version: 1.2
data-version: fbdv/releases/2021-07-05/fbdv-base.owl
date: 05:07:2021 10:41
data-version: fbdv/releases/2021-08-31/fbdv-base.owl
date: 31:08:2021 09:05
subsetdef: gocheck_do_not_annotate "Term not to be used for direct annotation"
subsetdef: gocheck_do_not_manually_annotate "Term not to be used for direct manual annotation"
subsetdef: goslim_aspergillus "Aspergillus GO slim"
Expand Down Expand Up @@ -30,7 +30,7 @@ property_value: IAO:0000700 FBdv:00000000
property_value: IAO:0000700 FBdv:00005259
property_value: IAO:0000700 FBdv:00007013
property_value: IAO:0000700 FBdv:00007024
property_value: owl:versionInfo "2021-07-05" xsd:string
property_value: owl:versionInfo "2021-08-31" xsd:string

[Term]
id: FBdv:00000000
Expand Down Expand Up @@ -2007,18 +2007,6 @@ relationship: immediately_preceded_by FBdv:00005317 ! gastrula stage
relationship: immediately_preceded_by FBdv:00005322 ! embryonic stage 8
relationship: substage_of FBdv:00005321 ! extended germ band stage

[Typedef]
id: ends_at_start_of
name: ends_at_start_of
xref: RO:0002090

[Typedef]
id: has_part
name: has_part
namespace: relationship
xref: BFO:0000051
xref: OBO_REL:has_part

[Typedef]
id: immediately_preceded_by
name: immediately_preceded_by
Expand All @@ -2029,18 +2017,6 @@ id: occurent_part_of
name: occurent_part_of
xref: RO:0002012

[Typedef]
id: overlaps
name: overlaps
xref: RO:0002131

[Typedef]
id: preceded_by
name: preceded_by
namespace: relationship
xref: BFO:0000062
xref: OBO_REL:preceded_by

[Typedef]
id: substage_of
name: substage_of
Expand Down
80 changes: 27 additions & 53 deletions fbdv-base.owl
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Expand Up @@ -12,7 +12,7 @@
xmlns:terms="http://purl.org/dc/terms/"
xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/fbdv/fbdv-base.owl">
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/fbdv/releases/2021-07-05/fbdv-base.owl"/>
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/fbdv/releases/2021-08-31/fbdv-base.owl"/>
<obo:IAO_0000700 rdf:resource="http://purl.obolibrary.org/obo/FBdv_00000000"/>
<obo:IAO_0000700 rdf:resource="http://purl.obolibrary.org/obo/FBdv_00005259"/>
<obo:IAO_0000700 rdf:resource="http://purl.obolibrary.org/obo/FBdv_00007013"/>
Expand All @@ -26,10 +26,10 @@
<dc:type rdf:resource="http://purl.obolibrary.org/obo/IAO_8000001"/>
<terms:license rdf:datatype="http://www.w3.org/2001/XMLSchema#string">https://creativecommons.org/licenses/by/3.0/</terms:license>
<oboInOwl:NamespaceIdRule rdf:datatype="http://www.w3.org/2001/XMLSchema#string">* FBdv:$sequence(8,7000,10000)$</oboInOwl:NamespaceIdRule>
<oboInOwl:date rdf:datatype="http://www.w3.org/2001/XMLSchema#string">05:07:2021 10:41</oboInOwl:date>
<oboInOwl:date rdf:datatype="http://www.w3.org/2001/XMLSchema#string">31:08:2021 09:05</oboInOwl:date>
<oboInOwl:default-namespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">FlyBase_development_CV</oboInOwl:default-namespace>
<oboInOwl:hasOBOFormatVersion rdf:datatype="http://www.w3.org/2001/XMLSchema#string">1.2</oboInOwl:hasOBOFormatVersion>
<owl:versionInfo rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2021-07-05</owl:versionInfo>
<owl:versionInfo rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2021-08-31</owl:versionInfo>
</owl:Ontology>


Expand Down Expand Up @@ -200,6 +200,30 @@



<!-- http://purl.org/dc/elements/1.1/creator -->

<owl:AnnotationProperty rdf:about="http://purl.org/dc/elements/1.1/creator"/>



<!-- http://purl.org/dc/elements/1.1/description -->

<owl:AnnotationProperty rdf:about="http://purl.org/dc/elements/1.1/description"/>



<!-- http://purl.org/dc/elements/1.1/title -->

<owl:AnnotationProperty rdf:about="http://purl.org/dc/elements/1.1/title"/>



<!-- http://purl.org/dc/terms/license -->

<owl:AnnotationProperty rdf:about="http://purl.org/dc/terms/license"/>



<!-- http://www.geneontology.org/formats/oboInOwl#NamespaceIdRule -->

<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#NamespaceIdRule">
Expand Down Expand Up @@ -357,32 +381,6 @@



<!-- http://purl.obolibrary.org/obo/BFO_0000051 -->

<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/BFO_0000051">
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">BFO:0000051</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">OBO_REL:has_part</oboInOwl:hasDbXref>
<oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">relationship</oboInOwl:hasOBONamespace>
<oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">has_part</oboInOwl:id>
<oboInOwl:shorthand rdf:datatype="http://www.w3.org/2001/XMLSchema#string">has_part</oboInOwl:shorthand>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">has_part</rdfs:label>
</owl:ObjectProperty>



<!-- http://purl.obolibrary.org/obo/BFO_0000062 -->

<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/BFO_0000062">
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">BFO:0000062</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">OBO_REL:preceded_by</oboInOwl:hasDbXref>
<oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">relationship</oboInOwl:hasOBONamespace>
<oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">preceded_by</oboInOwl:id>
<oboInOwl:shorthand rdf:datatype="http://www.w3.org/2001/XMLSchema#string">preceded_by</oboInOwl:shorthand>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">preceded_by</rdfs:label>
</owl:ObjectProperty>



<!-- http://purl.obolibrary.org/obo/FBdv_00018001 -->

<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/FBdv_00018001">
Expand Down Expand Up @@ -423,36 +421,12 @@



<!-- http://purl.obolibrary.org/obo/RO_0002090 -->

<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002090">
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">RO:0002090</oboInOwl:hasDbXref>
<oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">FlyBase_development_CV</oboInOwl:hasOBONamespace>
<oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">ends_at_start_of</oboInOwl:id>
<oboInOwl:shorthand rdf:datatype="http://www.w3.org/2001/XMLSchema#string">ends_at_start_of</oboInOwl:shorthand>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">ends_at_start_of</rdfs:label>
</owl:ObjectProperty>



<!-- http://purl.obolibrary.org/obo/RO_0002092 -->

<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002092"/>



<!-- http://purl.obolibrary.org/obo/RO_0002131 -->

<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002131">
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">RO:0002131</oboInOwl:hasDbXref>
<oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">FlyBase_development_CV</oboInOwl:hasOBONamespace>
<oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">overlaps</oboInOwl:id>
<oboInOwl:shorthand rdf:datatype="http://www.w3.org/2001/XMLSchema#string">overlaps</oboInOwl:shorthand>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">overlaps</rdfs:label>
</owl:ObjectProperty>



<!--
///////////////////////////////////////////////////////////////////////////////////////
//
Expand Down
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