Code

Add python CLI#14

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cansavvy merged 10 commits intomainFredHutch/pgmap:mainfrom python-cliFredHutch/pgmap:python-cliCopy head branch name to clipboardJan 15, 2025

+33,518-31

Commits

Commits on Dec 18, 2024

• Move counter to separate module

  marissafujimoto

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  ee3c1e0

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• Add argparse proof of concept

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  1110aee

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• Add argument parsing

  marissafujimoto

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  7745c57

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• Add loading library from annotation file

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  01280b2

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• Add libary annotation reader docs

  marissafujimoto

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  94f98b0

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• Get counts in cli

  marissafujimoto

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  32b7b11

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• Load id mappings from library annotation file

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  3e6f85b

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• Add file output writing

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• Make trim strategy required

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• Use hyphens instead of underscores for cli options

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