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2 changes: 1 addition & 1 deletion 08-multilevel-02.qmd
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Expand Up @@ -10,7 +10,7 @@ The content of this chapter is based on:

## Dependencies

This chapter uses the following libraries which are listed in the \[Dependency list\] Section of Chapter 1:
This chapter uses the following libraries which are listed in the @sec-dependencies in Chapter 1:

```{r, message = FALSE}
# Data manipulation, transformation and visualisation
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157 changes: 76 additions & 81 deletions docs/04-points.html

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28 changes: 14 additions & 14 deletions docs/07-multilevel-01.html
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Expand Up @@ -812,7 +812,7 @@ <h3 data-number="7.4.3" class="anchored" data-anchor-id="uncertainty-of-estimate
<div class="cell-output cell-output-stdout">
<pre><code> 2.5 % 97.5 %
.sig01 0.02360251 0.03189046
.sig02 0.03707708 0.05562307
.sig02 0.03707707 0.05562307
.sigma 0.04882281 0.05273830
(Intercept) 0.10307341 0.12751103</code></pre>
</div>
Expand Down Expand Up @@ -857,16 +857,16 @@ <h3 data-number="7.4.4" class="anchored" data-anchor-id="assessing-group-level-v
<span id="cb39-2"><a href="#cb39-2" aria-hidden="true" tabindex="-1"></a>merTools<span class="sc">::</span><span class="fu">REsim</span>(model3) <span class="sc">%&gt;%</span> <span class="fu">head</span>(<span class="dv">10</span>)</span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
<div class="cell-output cell-output-stdout">
<pre><code> groupFctr groupID term mean median sd
1 lsoa_cd E01006512 (Intercept) -0.018592359 -0.017357971 0.019939631
2 lsoa_cd E01006513 (Intercept) -0.019605586 -0.019652472 0.020596407
3 lsoa_cd E01006514 (Intercept) -0.023445594 -0.022406159 0.018881405
4 lsoa_cd E01006515 (Intercept) -0.018428143 -0.019563952 0.020154920
5 lsoa_cd E01006518 (Intercept) -0.021131710 -0.022228709 0.019869121
6 lsoa_cd E01006519 (Intercept) -0.015754234 -0.014896774 0.009301251
7 lsoa_cd E01006520 (Intercept) -0.025638616 -0.024678100 0.019366945
8 lsoa_cd E01006521 (Intercept) 0.007160055 0.007586036 0.020722821
9 lsoa_cd E01006522 (Intercept) 0.019963855 0.019436549 0.020315870
10 lsoa_cd E01006523 (Intercept) 0.003832499 0.004071048 0.019212771</code></pre>
1 lsoa_cd E01006512 (Intercept) -0.016090933 -0.016279825 0.020134603
2 lsoa_cd E01006513 (Intercept) -0.015635892 -0.016193114 0.019647670
3 lsoa_cd E01006514 (Intercept) -0.022289829 -0.022374465 0.018657688
4 lsoa_cd E01006515 (Intercept) -0.018205227 -0.017420404 0.018735274
5 lsoa_cd E01006518 (Intercept) -0.017721752 -0.016370427 0.019606654
6 lsoa_cd E01006519 (Intercept) -0.015710212 -0.015621840 0.009397891
7 lsoa_cd E01006520 (Intercept) -0.023901618 -0.023790192 0.018551656
8 lsoa_cd E01006521 (Intercept) 0.007266539 0.006503922 0.019235318
9 lsoa_cd E01006522 (Intercept) 0.019576849 0.018556373 0.019585302
10 lsoa_cd E01006523 (Intercept) 0.004543610 0.002947114 0.019247207</code></pre>
</div>
</div>
<p>The results contain the estimated mean, median and standard deviation for the intercept within each group (e.g.&nbsp;LSOA). The mean estimates are similar to those obtained from <code>ranef</code> with some small differences due to rounding.</p>
Expand Down Expand Up @@ -925,9 +925,9 @@ <h3 data-number="7.4.4" class="anchored" data-anchor-id="assessing-group-level-v
$ groupFctr: chr "msoa_cd" "msoa_cd" "msoa_cd" "msoa_cd" ...
$ groupID : chr "E02001347" "E02001348" "E02001349" "E02001350" ...
$ term : chr "(Intercept)" "(Intercept)" "(Intercept)" "(Intercept)" ...
$ mean : num -0.0135 -0.02378 -0.02675 0.00565 0.0211 ...
$ median : num -0.01594 -0.02481 -0.03053 0.00661 0.02124 ...
$ sd : num 0.0343 0.0284 0.0312 0.0322 0.0155 ...</code></pre>
$ mean : num -0.01306 -0.02417 -0.03594 0.00455 0.02435 ...
$ median : num -0.01421 -0.02405 -0.03499 0.00161 0.02427 ...
$ sd : num 0.0356 0.0308 0.032 0.0306 0.0152 ...</code></pre>
</div>
<div class="sourceCode cell-code" id="cb48"><pre class="sourceCode r code-with-copy"><code class="sourceCode r"><span id="cb48-1"><a href="#cb48-1" aria-hidden="true" tabindex="-1"></a><span class="co"># merge data</span></span>
<span id="cb48-2"><a href="#cb48-2" aria-hidden="true" tabindex="-1"></a>msoa_shp <span class="ot">&lt;-</span> <span class="fu">merge</span>(<span class="at">x =</span> msoa_shp, <span class="at">y =</span> re_msoa, <span class="at">by.x =</span> <span class="st">"MSOA_CD"</span>, <span class="at">by.y =</span> <span class="st">"groupID"</span>)</span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
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8 changes: 4 additions & 4 deletions docs/08-multilevel-02.html
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Expand Up @@ -313,7 +313,7 @@ <h1 class="title"><span id="sec-chp8" class="quarto-section-identifier d-none d-
</ul>
<section id="dependencies" class="level2" data-number="8.1">
<h2 data-number="8.1" class="anchored" data-anchor-id="dependencies"><span class="header-section-number">8.1</span> Dependencies</h2>
<p>This chapter uses the following libraries which are listed in the [Dependency list] Section of Chapter 1:</p>
<p>This chapter uses the following libraries which are listed in the <a href="01-overview.html#sec-dependencies"><span>Section&nbsp;1.4.1</span></a> in Chapter 1:</p>
<div class="cell">
<div class="sourceCode cell-code" id="cb1"><pre class="sourceCode r code-with-copy"><code class="sourceCode r"><span id="cb1-1"><a href="#cb1-1" aria-hidden="true" tabindex="-1"></a><span class="co"># Data manipulation, transformation and visualisation</span></span>
<span id="cb1-2"><a href="#cb1-2" aria-hidden="true" tabindex="-1"></a><span class="fu">library</span>(tidyverse)</span>
Expand Down Expand Up @@ -526,9 +526,9 @@ <h2 data-number="8.4" class="anchored" data-anchor-id="estimating-varying-interc
$ groupFctr: chr "msoa_cd" "msoa_cd" "msoa_cd" "msoa_cd" ...
$ groupID : chr "E02001347" "E02001348" "E02001349" "E02001350" ...
$ term : chr "lt_ill" "lt_ill" "lt_ill" "lt_ill" ...
$ mean : num 0.0267 -0.1029 0.0573 -0.1433 -0.2843 ...
$ median : num 0.0227 -0.1065 0.0639 -0.1417 -0.2824 ...
$ sd : num 0.0428 0.0765 0.0835 0.041 0.0394 ...</code></pre>
$ mean : num 0.0338 -0.1135 0.0579 -0.1473 -0.2838 ...
$ median : num 0.0328 -0.1167 0.0591 -0.1486 -0.2833 ...
$ sd : num 0.0463 0.0686 0.0789 0.0388 0.0415 ...</code></pre>
</div>
<div class="sourceCode cell-code" id="cb20"><pre class="sourceCode r code-with-copy"><code class="sourceCode r"><span id="cb20-1"><a href="#cb20-1" aria-hidden="true" tabindex="-1"></a><span class="co"># merge data</span></span>
<span id="cb20-2"><a href="#cb20-2" aria-hidden="true" tabindex="-1"></a>msoa_shp <span class="ot">&lt;-</span> <span class="fu">merge</span>(<span class="at">x =</span> msoa_shp, <span class="at">y =</span> re_msoa_m6, <span class="at">by.x =</span> <span class="st">"MSOA_CD"</span>, <span class="at">by.y =</span> <span class="st">"groupID"</span>)</span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
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8 changes: 4 additions & 4 deletions docs/index.html
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<meta name="viewport" content="width=device-width, initial-scale=1.0, user-scalable=yes">

<meta name="author" content="Francisco Rowe, Dani Arribas-Bel">
<meta name="dcterms.date" content="2023-02-13">
<meta name="dcterms.date" content="2023-03-13">

<title>Spatial Modelling for Data Scientists</title>
<style>
Expand Down Expand Up @@ -216,7 +216,7 @@ <h1 class="title d-none d-lg-block">Spatial Modelling for Data Scientists</h1>
<div>
<div class="quarto-title-meta-heading">Published</div>
<div class="quarto-title-meta-contents">
<p class="date">February 13, 2023</p>
<p class="date">March 13, 2023</p>
</div>
</div>

Expand All @@ -228,7 +228,7 @@ <h1 class="title d-none d-lg-block">Spatial Modelling for Data Scientists</h1>

<section id="welcome" class="level1 unnumbered">
<h1 class="unnumbered">Welcome</h1>
<p>This is the website for <strong>Spatial Modeling for Data Scientists 2022/23</strong>. This is a course taught by Dr.&nbsp;Francisco Rowe at the University of Liverpool, United Kingdom. The course materials were developed by Dr.&nbsp;Francisco Rowe and Professor Dani Arribas-Bel. You will learn how to analyse and model different types of spatial data as well as gaining an understanding of the various challenges arising from manipulating such data.</p>
<p>This is the website for <strong>Spatial Modeling for Data Scientists 2022/23</strong>. This is a course taught by Professor Francisco Rowe at the University of Liverpool, United Kingdom. The course materials were developed by Professor Francisco Rowe and Professor Dani Arribas-Bel. You will learn how to analyse and model different types of spatial data as well as gaining an understanding of the various challenges arising from manipulating such data.</p>
<p>The website is licensed under the <a href="https://creativecommons.org/licenses/by-nc-nd/4.0/">Attribution-NonCommercial-NoDerivatives 4.0 International</a> License. A compilation of this web course is hosted as a GitHub repository that you can access:</p>
<ul>
<li>As a <a href="https://github.com/GDSL-UL/san/archive/master.zip">download</a> of a <code>.zip</code> file that contains all the materials.</li>
Expand All @@ -240,7 +240,7 @@ <h1 class="unnumbered">Welcome</h1>
<h2 class="unnumbered anchored" data-anchor-id="contact">Contact</h2>
<blockquote class="blockquote">
<p>Francisco Rowe - <code>F.Rowe-Gonzalez [at] liverpool.ac.uk</code><br>
Senior Lecturer in Quantitative Human Geography<br>
Professor of Population Data Science<br>
Office 507, Roxby Building,<br>
University of Liverpool - 74 Bedford St S,<br>
Liverpool, L69 7ZT,<br>
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4 changes: 2 additions & 2 deletions index.qmd
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@@ -1,6 +1,6 @@
# Welcome {.unnumbered}

This is the website for **Spatial Modeling for Data Scientists 2022/23**. This is a course taught by Dr. Francisco Rowe at the University of Liverpool, United Kingdom. The course materials were developed by Dr. Francisco Rowe and Professor Dani Arribas-Bel. You will learn how to analyse and model different types of spatial data as well as gaining an understanding of the various challenges arising from manipulating such data.
This is the website for **Spatial Modeling for Data Scientists 2022/23**. This is a course taught by Professor Francisco Rowe at the University of Liverpool, United Kingdom. The course materials were developed by Professor Francisco Rowe and Professor Dani Arribas-Bel. You will learn how to analyse and model different types of spatial data as well as gaining an understanding of the various challenges arising from manipulating such data.

The website is licensed under the [Attribution-NonCommercial-NoDerivatives 4.0 International](https://creativecommons.org/licenses/by-nc-nd/4.0/) License. A compilation of this web course is hosted as a GitHub repository that you can access:

Expand All @@ -12,7 +12,7 @@ The website is licensed under the [Attribution-NonCommercial-NoDerivatives 4.0 I
## Contact {.unnumbered}

> Francisco Rowe - `F.Rowe-Gonzalez [at] liverpool.ac.uk`\
> Senior Lecturer in Quantitative Human Geography\
> Professor of Population Data Science\
> Office 507, Roxby Building,\
> University of Liverpool - 74 Bedford St S,\
> Liverpool, L69 7ZT,\
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