Merge pull request #43 from GEOS-ESM/mitupdate

geosmit env and  run scripts

MIT_GEOS5PlugMod/instructions/checkout_geosmitv11.1.1.txt

@@ -0,0 +1,119 @@
+git clone [email protected]:GEOS-ESM/GEOSgcm.git
+cd GEOSgcm
+git checkout tags/v11.1.1
+
+# NAS load modules
+
+module use -a /nobackup/gmao_SIteam/modulefiles
+module load GEOSenv
+mepo clone
+source @env/g5_modules
+
+
+# build
+
+mkdir build
+cd build
+
+cmake .. -DBASEDIR=$BASEDIR/Linux -DCMAKE_INSTALL_PREFIX=../install -DBUILD_MIT_OCEAN=ON -DMIT_CONFIG_ID=c90_llc90_02 -DCMAKE_Fortran_COMPILER=ifort
+
+# add at the end for debug -DCMAKE_BUILD_TYPE=Debug
+
+make -j 12 install
+
+cd ../install/bin/
+
+sed -i 's|setenv MASDIR /u/$LOGNAME/GEOS5.0/$expid|#setenv MASDIR /u/$LOGNAME/GEOS5.0/$expid|g' ../post/gcmpost.script
+
+sed -i '596i \ \ \ \ \ \ \ set DEFAULT_HISTORY_TEMPLATE="HISTORY.AOGCM.rc.tmpl"' gcm_setup
+
+
+
+# creating exp from install/bin/ directory
+
+./gcm_setup
+
+# example inputs
+
+Enter the Experiment ID:
+GEOSMIT_29test
+Enter a 1-line Experiment Description:
+test exp
+Do you wish to CLONE an old experiment? (Default: NO or FALSE)
+NO
+Enter the Atmospheric Horizontal Resolution code: 
+c90
+Enter the Atmospheric Model Vertical Resolution: LM (Default: 72)
+72
+Enter Choice for Atmospheric Model Microphysics: (Default: BACM_1M)
+BACM_1M
+
+Use Hydrostatic Atmosphere? (Default: TRUE)
+TRUE
+Do you wish to IOSERVER? (Default: NO or FALSE)
+NO
+Enter the Processor Type you wish to run on:
+sky
+Do you wish to run the COUPLED Ocean/Sea-Ice Model? (Default: NO or FALSE)
+YES
+
+Choose an Ocean Model: (Default: MOM5)
+MIT
+
+Choose a Seaice Model: (Default: CICE4)
+
+Enter the Ocean Horizontal Resolution: 
+llc90 
+
+Enter the Ocean Model Vertical Resolution: LM (Default: 50)
+50
+
+Enter the choice of  Land Surface Boundary Conditions using: 1 (Icarus), 2 (Default: Icarus-NLv3)
+2
+
+Enter the choice of  Land Surface Model using: 1 (Default: Catchment), 2 (CatchmentCN-CLM4.0 (CN_CLM40)), 3 (CatchmentCN-CLM4.5 (CN_CLM45))
+1
+
+Do you wish to run GOCART with Actual or Climatological Aerosols? (Enter: A (Default) or C)
+A
+
+Enter the GOCART Emission Files to use: AMIP (Default) or OPS:
+AMIP
+
+Enter HEARTBEAT_DT to use
+450
+
+Enter the filename of the HISTORY template to use
+-----------------------------------------------------------
+As MIT was chosen, the default HISTORY Template is HISTORY.AOGCM.rc.tmpl
+  1. Hit ENTER to use the default HISTORY template (HISTORY.AOGCM.rc.tmpl)
+Using HISTORY.AOGCM.rc.tmpl
+
+You must now copy your Initial Conditions into: 
+----------------------------------------------- 
+/nobackupp11/afahad/exp/GEOSMIT_29test
+
+
+
+# config exp
+
+#cd to exp dir
+
+cd /nobackupp11/afahad/exp/GEOSMIT_29test
+
+#copy GEOS restarts
+cp /nobackupp11/afahad/GEOSMITgcmFiles/restarts-orig/* .
+
+#copy mit input dir
+cp -r /nobackupp11/afahad/GEOSMITgcmFiles/mit_input_llc90_02/ mit_input
+
+# copy env script
+cp /nobackupp11/afahad/GEOSMITgcmFiles/geosmitenv_v11.1.1.sh .
+
+./geosmitenv_v11.1.sh
+
+#submit job
+
+qsub gcm_run.j
+
+

MIT_GEOS5PlugMod/instructions/checkout_geosmitv11.1.txt

@@ -0,0 +1,115 @@
+git clone [email protected]:GEOS-ESM/GEOSgcm.git
+cd GEOSgcm
+git checkout tags/v11.1.0
+
+# NAS load modules
+
+module use -a /nobackup/gmao_SIteam/modulefiles
+module load GEOSenv
+mepo clone
+source @env/g5_modules
+
+
+# build
+
+mkdir build
+cd build
+
+cmake .. -DBASEDIR=$BASEDIR/Linux -DCMAKE_INSTALL_PREFIX=../install -DBUILD_MIT_OCEAN=ON -DMIT_CONFIG_ID=c90_llc90_02 -DCMAKE_Fortran_COMPILER=ifort
+
+# add at the end for debug -DCMAKE_BUILD_TYPE=Debug
+
+make -j 12 install
+
+cd ../install/bin/
+
+sed -i '577i \ \ \ \ \ \ \ set DEFAULT_HISTORY_TEMPLATE="HISTORY.AOGCM.rc.tmpl"' gcm_setup
+
+
+
+# creating exp from install/bin/ directory
+
+./gcm_setup
+
+# example inputs
+
+Enter the Experiment ID:
+GEOSMIT_29test
+Enter a 1-line Experiment Description:
+test exp
+Do you wish to CLONE an old experiment? (Default: NO or FALSE)
+NO
+Enter the Atmospheric Horizontal Resolution code: 
+c90
+Enter the Atmospheric Model Vertical Resolution: LM (Default: 72)
+72
+Enter Choice for Atmospheric Model Microphysics: (Default: BACM_1M)
+BACM_1M
+
+Use Hydrostatic Atmosphere? (Default: TRUE)
+TRUE
+Do you wish to IOSERVER? (Default: NO or FALSE)
+NO
+Enter the Processor Type you wish to run on:
+sky
+Do you wish to run the COUPLED Ocean/Sea-Ice Model? (Default: NO or FALSE)
+YES
+
+Choose an Ocean Model: (Default: MOM5)
+MIT
+
+Enter the Ocean Horizontal Resolution: 
+llc90 
+
+Enter the Ocean Model Vertical Resolution: LM (Default: 50)
+50
+
+Enter the choice of  Land Surface Boundary Conditions using: 1 (Icarus), 2 (Default: Icarus-NLv3)
+2
+
+Enter the choice of  Land Surface Model using: 1 (Default: Catchment), 2 (CatchmentCN-CLM4.0 (CN_CLM40)), 3 (CatchmentCN-CLM4.5 (CN_CLM45))
+1
+
+Do you wish to run GOCART with Actual or Climatological Aerosols? (Enter: A (Default) or C)
+A
+
+Enter the GOCART Emission Files to use: AMIP (Default) or OPS:
+AMIP
+
+Enter HEARTBEAT_DT to use
+450
+
+Enter the filename of the HISTORY template to use
+-----------------------------------------------------------
+As MIT was chosen, the default HISTORY Template is HISTORY.AOGCM.rc.tmpl
+  1. Hit ENTER to use the default HISTORY template (HISTORY.AOGCM.rc.tmpl)
+Using HISTORY.AOGCM.rc.tmpl
+
+You must now copy your Initial Conditions into: 
+----------------------------------------------- 
+/nobackupp11/afahad/exp/GEOSMIT_29test
+
+
+
+# config exp
+
+#cd to exp dir
+
+cd /nobackupp11/afahad/exp/GEOSMIT_29test
+
+#copy GEOS restarts
+cp /nobackupp11/afahad/GEOSMITgcmFiles/restarts-orig/* .
+
+#copy mit input dir
+cp -r /nobackupp11/afahad/GEOSMITgcmFiles/mit_input_llc90_02/ mit_input
+
+# copy env script
+cp /nobackupp11/afahad/GEOSMITgcmFiles/geosmitenv_v11.1.sh .
+
+./geosmitenv_v11.1.sh
+
+#submit job
+
+qsub gcm_run.j
+
+