Renamed analyses folders

Gchism94 · Oct 31, 2023 · c238d05 · c238d05
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diff --git a/.gitignore b/.gitignore
@@ -1,7 +1,7 @@
 .Rproj.user
 .Rhistory
-.RData
+.RData*
 .Ruserdata
 Zombie.R
 distributionsTest.R
-rayleigh*
+rayleigh*
diff --git a/Three-way Interaction.png b/Three-way Interaction.png
diff --git a/analysis/.DS_Store b/analysis/.DS_Store
diff --git a/analysis/figures/Fig1 2.jpg b/analysis/figures/Fig1 2.jpg
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diff --git a/analysis/figures/Fig2 2.pdf b/analysis/figures/Fig2 2.pdf
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diff --git a/analysis/figures/Fig8.pdf b/analysis/figures/Fig8.pdf
diff --git a/analysis/supplementary-materials/.DS_Store b/analysis/supplementary-materials/.DS_Store
diff --git a/analysis/supplementary-materials/supplementaryFigures/Fig_A1 2.png b/analysis/supplementary-materials/supplementaryFigures/Fig_A1 2.png
diff --git a/analysis/supplementary-materials/supplementaryFigures/Fig_A3 2.png b/analysis/supplementary-materials/supplementaryFigures/Fig_A3 2.png
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diff --git a/analysis/supplementary-materials/supplementaryFigures/Fig_A5 2.png b/analysis/supplementary-materials/supplementaryFigures/Fig_A5 2.png
diff --git a/analysis/supplementary-materials/supplementaryTables/TableA1 2.docx b/analysis/supplementary-materials/supplementaryTables/TableA1 2.docx
diff --git a/analysis/supplementary-materials/supplementaryTables/TableA2 2.docx b/analysis/supplementary-materials/supplementaryTables/TableA2 2.docx
diff --git a/analysis/supplementary-materials/supplementaryTables/TableA3 2.docx b/analysis/supplementary-materials/supplementaryTables/TableA3 2.docx
diff --git a/analysis/tables/Table1 2.docx b/analysis/tables/Table1 2.docx
diff --git a/analysis/tables/Table1 2.html b/analysis/tables/Table1 2.html
diff --git a/analysis/tables/Table1 2.pdf b/analysis/tables/Table1 2.pdf
diff --git a/analysis/tables/Table2 2.docx b/analysis/tables/Table2 2.docx
diff --git a/analysis/tables/Table2 2.html b/analysis/tables/Table2 2.html
diff --git a/analysis/tables/Table2 2.pdf b/analysis/tables/Table2 2.pdf
diff --git a/analysis/tables/Table3 2.docx b/analysis/tables/Table3 2.docx
diff --git a/analysis/tables/Table3 2.html b/analysis/tables/Table3 2.html
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+<table style="border-collapse:collapse; border:none;">
+<caption style="font-weight: bold; text-align:left;">Linear Mixed Effects: worker scaled distance to brood center vs.<br>scaled distance to nest entrance</caption>
+<tr>
+<th style="border-top: double; text-align:center; font-style:normal; font-weight:bold; padding:0.2cm;  text-align:left; ">&nbsp;</th>
+<th colspan="5" style="border-top: double; text-align:center; font-style:normal; font-weight:bold; padding:0.2cm; ">Mean To Brood</th>
+</tr>
+<tr>
+<td style=" text-align:center; border-bottom:1px solid; font-style:italic; font-weight:normal;  text-align:left; ">Coeffcient</td>
+<td style=" text-align:center; border-bottom:1px solid; font-style:italic; font-weight:normal;  ">Est.</td>
+<td style=" text-align:center; border-bottom:1px solid; font-style:italic; font-weight:normal;  ">SE</td>
+<td style=" text-align:center; border-bottom:1px solid; font-style:italic; font-weight:normal;  ">df</td>
+<td style=" text-align:center; border-bottom:1px solid; font-style:italic; font-weight:normal;  ">T</td>
+<td style=" text-align:center; border-bottom:1px solid; font-style:italic; font-weight:normal;  ">P</td>
+</tr>
+<tr>
+<td style=" padding:0.2cm; text-align:left; vertical-align:top; text-align:left; ">Intercept</td>
+<td style=" padding:0.2cm; text-align:left; vertical-align:top; text-align:center;  ">0.133</td>
+<td style=" padding:0.2cm; text-align:left; vertical-align:top; text-align:center;  ">0.025</td>
+<td style=" padding:0.2cm; text-align:left; vertical-align:top; text-align:center;  ">377</td>
+<td style=" padding:0.2cm; text-align:left; vertical-align:top; text-align:center;  ">5.375</td>
+<td style=" padding:0.2cm; text-align:left; vertical-align:top; text-align:center;  "><strong>&lt;0.001</strong></td>
+</tr>
+<tr>
+<td style=" padding:0.2cm; text-align:left; vertical-align:top; text-align:left; ">MeanScaledDist</td>
+<td style=" padding:0.2cm; text-align:left; vertical-align:top; text-align:center;  ">&#45;0.332</td>
+<td style=" padding:0.2cm; text-align:left; vertical-align:top; text-align:center;  ">0.132</td>
+<td style=" padding:0.2cm; text-align:left; vertical-align:top; text-align:center;  ">377</td>
+<td style=" padding:0.2cm; text-align:left; vertical-align:top; text-align:center;  ">&#45;2.521</td>
+<td style=" padding:0.2cm; text-align:left; vertical-align:top; text-align:center;  "><strong>0.012</strong></td>
+</tr>
+<tr>
+<td style=" padding:0.2cm; text-align:left; vertical-align:top; text-align:left; ">Nest</td>
+<td style=" padding:0.2cm; text-align:left; vertical-align:top; text-align:center;  ">&#45;0.079</td>
+<td style=" padding:0.2cm; text-align:left; vertical-align:top; text-align:center;  ">0.030</td>
+<td style=" padding:0.2cm; text-align:left; vertical-align:top; text-align:center;  ">377</td>
+<td style=" padding:0.2cm; text-align:left; vertical-align:top; text-align:center;  ">&#45;2.639</td>
+<td style=" padding:0.2cm; text-align:left; vertical-align:top; text-align:center;  "><strong>0.009</strong></td>
+</tr>
+<tr>
+<td style=" padding:0.2cm; text-align:left; vertical-align:top; text-align:left; ">Density</td>
+<td style=" padding:0.2cm; text-align:left; vertical-align:top; text-align:center;  ">0.015</td>
+<td style=" padding:0.2cm; text-align:left; vertical-align:top; text-align:center;  ">0.013</td>
+<td style=" padding:0.2cm; text-align:left; vertical-align:top; text-align:center;  ">377</td>
+<td style=" padding:0.2cm; text-align:left; vertical-align:top; text-align:center;  ">1.151</td>
+<td style=" padding:0.2cm; text-align:left; vertical-align:top; text-align:center;  ">0.250</td>
+</tr>
+<tr>
+<td style=" padding:0.2cm; text-align:left; vertical-align:top; text-align:left; ">MeanScaledDist:Nest</td>
+<td style=" padding:0.2cm; text-align:left; vertical-align:top; text-align:center;  ">0.686</td>
+<td style=" padding:0.2cm; text-align:left; vertical-align:top; text-align:center;  ">0.137</td>
+<td style=" padding:0.2cm; text-align:left; vertical-align:top; text-align:center;  ">377</td>
+<td style=" padding:0.2cm; text-align:left; vertical-align:top; text-align:center;  ">4.988</td>
+<td style=" padding:0.2cm; text-align:left; vertical-align:top; text-align:center;  "><strong>&lt;0.001</strong></td>
+</tr>
+<tr>
+<td colspan="6" style="font-weight:bold; text-align:left; padding-top:.8em;">Random Effects</td>
+</tr>
+
+<tr>
+<td style=" padding:0.2cm; text-align:left; vertical-align:top; text-align:left; padding-top:0.1cm; padding-bottom:0.1cm;">&sigma;<sup>2</sup></td>
+<td style=" padding:0.2cm; text-align:left; vertical-align:top; padding-top:0.1cm; padding-bottom:0.1cm; text-align:left;" colspan="5">0.00</td>
+</tr>
+
+<tr>
+<td style=" padding:0.2cm; text-align:left; vertical-align:top; text-align:left; padding-top:0.1cm; padding-bottom:0.1cm;">&tau;<sub>00</sub> <sub>Colony</sub></td>
+<td style=" padding:0.2cm; text-align:left; vertical-align:top; padding-top:0.1cm; padding-bottom:0.1cm; text-align:left;" colspan="5">0.00</td>
+
+<tr>
+<td style=" padding:0.2cm; text-align:left; vertical-align:top; text-align:left; padding-top:0.1cm; padding-bottom:0.1cm;">N <sub>Colony</sub></td>
+<td style=" padding:0.2cm; text-align:left; vertical-align:top; padding-top:0.1cm; padding-bottom:0.1cm; text-align:left;" colspan="5">19</td>
+<tr>
+<td style=" padding:0.2cm; text-align:left; vertical-align:top; text-align:left; padding-top:0.1cm; padding-bottom:0.1cm; border-top:1px solid;">Observations</td>
+<td style=" padding:0.2cm; text-align:left; vertical-align:top; padding-top:0.1cm; padding-bottom:0.1cm; text-align:left; border-top:1px solid;" colspan="5">384</td>
+</tr>
+<tr>
+<td style=" padding:0.2cm; text-align:left; vertical-align:top; text-align:left; padding-top:0.1cm; padding-bottom:0.1cm;">Marginal R<sup>2</sup> / Conditional R<sup>2</sup></td>
+<td style=" padding:0.2cm; text-align:left; vertical-align:top; padding-top:0.1cm; padding-bottom:0.1cm; text-align:left;" colspan="5">0.604 / 0.634</td>
+</tr>
+
+</table>
+
diff --git a/analysis/tables/Table3 2.pdf b/analysis/tables/Table3 2.pdf
diff --git a/test.png b/test.png