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Add HMMER application to Ramble #231

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dodecatheon
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This application runs hmmsearch, one of 19 binaries compiled as part of the hmmer spack package.

The single workload runs the uniprot_sprot.fasta input on the Pfam-A database.

Figures of Merit are Elapsed time (for the pipeline, not the total hmmsearch run) and Million dynamic cells per second.

@dodecatheon dodecatheon force-pushed the add-hmmer-application branch 2 times, most recently from 40b9ed1 to 7dc6974 Compare July 31, 2023 18:25
(Change software specs to avoid naming conflict with other apps)
(Update description and change openmpi to intel-mpi)
(change impi_2018 software spec to avoid naming conflict)
@douglasjacobsen douglasjacobsen added the application definition Adds or modifies an application definition label Aug 1, 2023
@douglasjacobsen douglasjacobsen merged commit 644e8de into GoogleCloudPlatform:develop Aug 1, 2023
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3 participants