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@GuignardLab

Guignard Lab

README.md

Computer Science, Morphogenesis and Variability ‼️Open positions‼️

👋 Hello and welcome to the GitHub of the Guignard Lab or the Computer Science, Morphogenesis and Variability group 👋

We are theoreticians from many different backgrounds (🧑‍🔬biology, 🧑‍💻computer science, physics or mathematics). We work at trying to 🕵️better our understanding of embryo formation. We develop novel methods to quantify the development at the single cell scale using recordings from 🔬fluorescence microscopy🔬 and 🧬spatial omics🧬 and many different model and non-model organisms: 🐭mouse, 🦐Parhyale or gastruloids for example.

We mainly code in 🐍 Python 🐍 but are open to any open source language.

You can find more information about our research on our webpage or on the group page of the IBDM website

Current team members:

Former team members:

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  1. CenTuri-Course CenTuri-Course Public

    Python Course

    Jupyter Notebook 2 5

  2. sc3D sc3D Public

    Spatial Single Cell transcriptomic library

    Jupyter Notebook 17

  3. napari-sc3D-viewer napari-sc3D-viewer Public

    A plugin to visualise 3D spatial single cell omics

    Python 21 2

  4. registration-tools registration-tools Public

    Python 3 1

Repositories

Showing 10 of 23 repositories
  • napari-file2folder Public
    GuignardLab/napari-file2folder’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Jan 12, 2025
  • LineageTree Public

    Module to read and "work" with lineage trees

    GuignardLab/LineageTree’s past year of commit activity
    Jupyter Notebook 6 MIT 2 0 0 Updated Jan 11, 2025
  • napari-tapenade-processing Public
    GuignardLab/napari-tapenade-processing’s past year of commit activity
    Python 1 MIT 0 0 0 Updated Jan 9, 2025
  • tapenade Public
    GuignardLab/tapenade’s past year of commit activity
    Python 6 MIT 0 0 1 Updated Jan 9, 2025
  • sc3D Public

    Spatial Single Cell transcriptomic library

    GuignardLab/sc3D’s past year of commit activity
    Jupyter Notebook 17 MIT 0 0 0 Updated Jan 8, 2025
  • napari-spatial-correlation-plotter Public
    GuignardLab/napari-spatial-correlation-plotter’s past year of commit activity
    Python 4 MIT 0 0 0 Updated Dec 10, 2024
  • napari-manual-registration Public
    GuignardLab/napari-manual-registration’s past year of commit activity
    Python 3 BSD-3-Clause 0 2 0 Updated Dec 10, 2024
  • registration-tools Public
    GuignardLab/registration-tools’s past year of commit activity
    Python 3 1 0 2 Updated Jul 2, 2024
  • Two-Channels-Correlation Public
    GuignardLab/Two-Channels-Correlation’s past year of commit activity
    Python 0 MIT 0 0 0 Updated May 31, 2024
  • napari-sc3D-viewer Public

    A plugin to visualise 3D spatial single cell omics

    GuignardLab/napari-sc3D-viewer’s past year of commit activity
    Python 21 MIT 2 0 0 Updated Apr 3, 2024
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