Skip to content

Removed the use of H5VLpeek_connector_id_by_name #565

Removed the use of H5VLpeek_connector_id_by_name

Removed the use of H5VLpeek_connector_id_by_name #565

Workflow file for this run

name: Ubuntu with OpenMPI
on:
push:
branches: [ master, dev ]
paths-ignore:
- '**/*.md'
- '**/*.txt'
- '**/*.jpg'
- '**/*.png'
- 'docs/*'
- 'case_studies/*'
pull_request:
branches: [ master, dev ]
paths-ignore:
- '**/*.md'
- '**/*.txt'
- '**/*.jpg'
- '**/*.png'
- 'docs/*'
- 'case_studies/*'
env:
NETCDF_VERSION: 4.9.2
jobs:
build:
runs-on: ubuntu-latest
timeout-minutes: 60
steps:
- uses: actions/[email protected]
- name: Set up dependencies
run: |
sudo apt-get update
sudo apt-get install automake autoconf libtool libtool-bin m4 uuid-dev
# zlib
sudo apt-get install zlib1g-dev
# mpi
sudo apt-get install openmpi-bin openmpi-common libopenmpi-dev libgtk2.0-dev
echo "---- location of OpenMPI C compiler ----"
which mpicc
- name: Install HDF5
run: |
cd ${GITHUB_WORKSPACE}
echo "Install HDF5 on ${GITHUB_WORKSPACE}/HDF5"
rm -rf HDF5 ; mkdir HDF5 ; cd HDF5
wget -cq https://github.com/HDFGroup/hdf5/releases/latest/download/hdf5.tar.gz
tar -zxf hdf5.tar.gz
cd hdf5-*
./configure --prefix=${GITHUB_WORKSPACE}/HDF5 \
--silent \
--enable-parallel \
--enable-build-mode=production \
--enable-unsupported \
--enable-threadsafe \
--disable-doxygen-doc \
--disable-doxygen-man \
--disable-doxygen-html \
--disable-tests \
--disable-fortran \
--disable-cxx \
CC=mpicc
make -s LIBTOOLFLAGS=--silent V=1 -j 4 install > qout 2>&1
make -s -j 4 distclean >> qout 2>&1
- name: Dump config.log if HDF5 fails to build
if: ${{ failure() }}
run: |
cat ${GITHUB_WORKSPACE}/HDF5/hdf5-${HDF5_VERSION}/config.log
- name: Install NetCDF
run: |
cd ${GITHUB_WORKSPACE}
echo "Install NetCDF-C on ${GITHUB_WORKSPACE}/NetCDF"
rm -rf NetCDF ; mkdir NetCDF ; cd NetCDF
wget -cq https://github.com/Unidata/netcdf-c/archive/refs/tags/v${NETCDF_VERSION}.tar.gz
tar -zxf v${NETCDF_VERSION}.tar.gz
cd netcdf-c-${NETCDF_VERSION}
./configure --prefix=${GITHUB_WORKSPACE}/NetCDF \
--silent \
--disable-dap \
--disable-nczarr \
--disable-nczarr-filters \
--disable-filter-testing \
--disable-byterange \
--disable-shared \
CC=mpicc \
CPPFLAGS="-I${GITHUB_WORKSPACE}/HDF5/include" \
LDFLAGS="-L${GITHUB_WORKSPACE}/HDF5/lib" \
LIBS="-lhdf5"
make -s LIBTOOLFLAGS=--silent V=1 -j 4 install > qout 2>&1
make -s -j 4 distclean >> qout 2>&1
- name: Dump config.log if NetCDF4 fails to build
if: ${{ failure() }}
run: |
cat ${GITHUB_WORKSPACE}/NetCDF/netcdf-c-${NETCDF_VERSION}/config.log
- name: Configure Log VOL connector
run: |
cd ${GITHUB_WORKSPACE}
autoreconf -i
./configure --with-hdf5=${GITHUB_WORKSPACE}/HDF5 \
--enable-test-netcdf4=${GITHUB_WORKSPACE}/NetCDF \
--disable-test-hdf5-iotest \
TESTMPIRUN="mpiexec --oversubscribe -n NP"
# Do NOT test QMCPACK, as it requires FFTW which fails to build
- name: Print config.log if error
if: ${{ failure() }}
run: |
cd ${GITHUB_WORKSPACE}
cat config.log
- name: Build Log VOL connector
if: ${{ success() }}
run: |
cd ${GITHUB_WORKSPACE}
make -j 4
# Do NOT parallel build, cmake for external tests can fail
make tests
- name: Serial-run test - make check
if: ${{ success() }}
run: |
cd ${GITHUB_WORKSPACE}
make check
- name: Print test log files
if: ${{ always() }}
run: |
cd ${GITHUB_WORKSPACE}
fname=`find tests utils examples -type f -name "*.log"`
for f in $fname ; do \
bname=`basename $f` ; \
if test "x$bname" != xconfig.log ; then \
echo "-------- dump $f ----------------------------" ; \
cat $f ; \
fi ; \
done
- name: Parallel-run test - make ptest
if: ${{ success() }}
run: |
cd ${GITHUB_WORKSPACE}
make ptest
- name: Test distribution - make distcheck
if: ${{ success() }}
run: |
cd ${GITHUB_WORKSPACE}
make -j4 -s V=1 LIBTOOLFLAGS=--silent distcheck DISTCHECK_CONFIGURE_FLAGS="--silent --with-hdf5=${GITHUB_WORKSPACE}/HDF5"
- name: make distclean
if: ${{ always() }}
run: |
cd ${GITHUB_WORKSPACE}
make -s distclean