Merge branch 'main' of https://github.com/HelgeGehring/femwell

.docker/Dockerfile

@@ -0,0 +1,16 @@
+FROM ghcr.io/mamba-org/micromamba:latest
+
+USER root
+RUN apt-get update && apt-get install -y --no-install-recommends \
+    gmsh \
+    && rm -rf /var/lib/apt/lists/*
+USER $MAMBA_USER
+
+COPY  --chmod=777 . ${HOME}
+
+RUN micromamba install -y -n base -f environment.yml julia && micromamba clean --all --yes
+ARG MAMBA_DOCKERFILE_ACTIVATE=1
+RUN pip install --no-cache notebook jupyterlab
+RUN pip install .
+
+RUN /bin/sh -c JULIA_PROJECT="" julia -e "using Pkg; Pkg.add(\"IJulia\"); using IJulia; installkernel(\"Julia\", \"--project=.\");" && julia --project=${REPO_DIR} -e 'using Pkg; Pkg.instantiate(); Pkg.resolve(); pkg"precompile"'

.github/workflows/docker.yml

@@ -0,0 +1,38 @@
+#
+name: docker
+
+on: push
+
+env:
+  REGISTRY: ghcr.io
+  IMAGE_NAME: ${{ github.repository }}
+
+jobs:
+  build-and-push-image:
+    runs-on: ubuntu-latest
+    permissions:
+      contents: read
+      packages: write
+    steps:
+      - name: Checkout repository
+        uses: actions/checkout@v3
+
+      - name: Log in to the Container registry
+        uses: docker/login-action@v2
+        with:
+          registry: ${{ env.REGISTRY }}
+          username: ${{ github.actor }}
+          password: ${{ secrets.GITHUB_TOKEN }}
+      - name: Extract metadata (tags, labels) for Docker
+        id: meta
+        uses: docker/metadata-action@v4
+        with:
+          images: ${{ env.REGISTRY }}/${{ env.IMAGE_NAME }}
+      - name: Build and push Docker image
+        uses: docker/build-push-action@v4
+        with:
+          context: .
+          file: .docker/Dockerfile
+          push: ${{ github.ref == 'refs/heads/main' }}
+          tags: ${{ steps.meta.outputs.tags }}
+          labels: ${{ steps.meta.outputs.labels }}

Dockerfile

@@ -0,0 +1 @@
+FROM ghcr.io/helgegehring/femwell@sha256:99ddc085fa52dd992a079b6a9126a35fe0a8819b94555f83806c5afde1507421

environment.yml

@@ -2,7 +2,7 @@ name: conda_env
 channels:
   - conda-forge
 dependencies:
-  - python=3.10
+  - python
   - pip
   - slepc4py=*=complex*
   - numpy
@@ -14,4 +14,3 @@ dependencies:
       - meshio
       - tqdm
       - scikit-fem >=1.2.3
-      - git+https://github.com/HelgeGehring/femwell.git