Name | M+/M- | M++ | Exv. | #sep-P | #sep-S | #sep-B | |
---|---|---|---|---|---|---|---|
RNA | DT13 | DH | N/A | WCA | 3 | 3 | 2 |
RNA | DT15 | Coulomb | Coulomb | mWCA | 3 | 3 | 2 |
RNA | DHT18 | N/A | |||||
RNA | NHT19 | DH | PMF | mWCA | 4 | 4 | 2 |
DNA | CHT18 | DH | N/A | WCA | 3 | 3 | 2 |
DNA | TBA | DH | PMF |
- Linear S: linear nucleic acid whose 5'-end starts from sugar
- Linear P: linear nucleic acid whose 5'-end starts from phosphate
- Circular: circular nucleic acid
Linear S | Linear P | Circular (always P) | |
---|---|---|---|
nucleotides | N | N | N |
P | N-1 | N | N |
S | N | N | N |
B | N | N | N |
nmp | 3N-1 | 3N | 3N |
Linear S | Linear P | Circular (always P) | |
---|---|---|---|
PS | N-1 | N | N |
SB | N | N | N |
SP | N-1 | N-1 | N |
Total | 3N-2 | 3N-1 | 3N |
Linear S | Linear P | Circular (always P) | |
---|---|---|---|
PSB | N-1 | N | N |
PSP | N-2 | N-1 | N |
BSP | N-1 | N-1 | N |
SPS | N-1 | N-1 | N |
Total | 4N-5 | 4N-3 | 4N |
tst-dist
- share with secondary stack (
exclusive = False
) - exclusively tertiary stack alone (
exclusive = True
)