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Updated medication ontology sources #1605

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6 changes: 3 additions & 3 deletions docs/jsonBrowser/module.md
Original file line number Diff line number Diff line change
Expand Up @@ -232,9 +232,9 @@ Location: module/ontology/medication_ontology.json

Property name | Description | Type | Required? | Object reference? | User friendly name | Allowed values | Example
--- | --- | --- | --- | --- | --- | --- | ---
text | Medication(s) the individual was taking at time of biomaterial collection. | string | yes | | Medication | | bisoprolol; paracetamol; loratadine
ontology | An ontology term identifier in the form prefix:accession. | string | no | | Medication ontology ID | | CHEBI:3127; CHEBI:46195; CHEBI:6538
ontology_label | The preferred label for the ontology term referred to in the ontology field. This may differ from the user-supplied value in the text field. | string | no | | Medication ontology label | | bisoprolol; paracetamol; loratadine
text | Medication(s) the individual was taking at time of biomaterial collection. | string | yes | | Medication | | Ibuprofen Lysine; Bisoprolol; Ambroxol Hydrochloride
ontology | An ontology term identifier in the form prefix:accession. | string | no | | Medication ontology ID | | NCIT:C72809; NCIT:C61653; NCIT:C78113
ontology_label | The preferred label for the ontology term referred to in the ontology field. This may differ from the user-supplied value in the text field. | string | no | | Medication ontology label | | Ibuprofen Lysine; Bisoprolol; Ambroxol Hydrochloride

## File format ontology<a name='File format ontology'></a>
_A term that may be associated with a file format-related ontology term._
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2 changes: 1 addition & 1 deletion docs/jsonBrowser/required_fields.md
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Expand Up @@ -287,7 +287,7 @@ text | The name of the strain to which the organism belongs. | string | | Strai
### Medication ontology<a name='Medication ontology'></a>
Property name | Description | Type | Object reference? | User friendly name | Allowed values | Example
--- | --- | --- | --- | --- | --- | ---
text | Medication(s) the individual was taking at time of biomaterial collection. | string | | Medication | | bisoprolol; paracetamol; loratadine
text | Medication(s) the individual was taking at time of biomaterial collection. | string | | Medication | | Ibuprofen Lysine; Bisoprolol; Ambroxol Hydrochloride
### File format ontology<a name='File format ontology'></a>
Property name | Description | Type | Object reference? | User friendly name | Allowed values | Example
--- | --- | --- | --- | --- | --- | ---
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10 changes: 5 additions & 5 deletions json_schema/module/ontology/medication_ontology.json
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Expand Up @@ -24,26 +24,26 @@
"description": "Medication(s) the individual was taking at time of biomaterial collection.",
"type": "string",
"user_friendly": "Medication",
"example": "bisoprolol; paracetamol; loratadine"
"example": "Ibuprofen Lysine; Bisoprolol; Ambroxol Hydrochloride"
},
"ontology": {
"description": "An ontology term identifier in the form prefix:accession.",
"type": "string",
"graph_restriction": {
"ontologies" : ["obo:dron"],
"classes": ["BFO:0000040"],
"ontologies" : ["obo:ncit"],
"classes": ["ncit:C1505", "ncit:C54060", "ncit:C1909", "ncit:C129986", "ncit:C1899", "ncit:C1913"],
"relations": ["rdfs:subClassOf"],
"direct": false,
"include_self": false
},
"user_friendly": "Medication ontology ID",
"example": "CHEBI:3127; CHEBI:46195; CHEBI:6538"
"example": "NCIT:C72809; NCIT:C61653; NCIT:C78113"
},
"ontology_label": {
"description": "The preferred label for the ontology term referred to in the ontology field. This may differ from the user-supplied value in the text field.",
"type": "string",
"user_friendly": "Medication ontology label",
"example": "bisoprolol; paracetamol; loratadine"
"example": "Ibuprofen Lysine; Bisoprolol; Ambroxol Hydrochloride"
}
}
}
1 change: 1 addition & 0 deletions json_schema/update_log.csv
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@@ -1 +1,2 @@
Schema,Change type,Change message,Version,Date
module/ontology/medication_ontology,major,Changed ontology source for the medication_ontology,,
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