test if only DESeq2 the problem #14

	name: Test Shiny App Startup

	on: [push]

	jobs:
	build:
Check failure on line 6 in .github/workflows/start_check.yaml View workflow run for this annotation GitHub Actions / .github/workflows/start_check.yaml Invalid workflow file `You have an error in your yaml syntax on line 6`
	runs-on: ubuntu-latest
	env:
	RENV_PATHS_ROOT: ~/.cache/R/renv
	container:
	image: rstudio/r-base:4.4.1

	steps:
	- uses: actions/checkout@v3
	- uses: r-lib/actions/setup-r@v2
	with:
	r-version:4.2.0

	- name: Install system dependencies
	run: \|
	sudo apt-get update
	sudo apt-get install -y libcurl4-openssl-dev libssl-dev libxml2-dev libsqlite3-dev libglu1-mesa-dev default-jdk libmagick++-dev
	sudo apt install curl

	- name: Cache packages
	uses: actions/cache@v2
	with:
	path: ${{ env.RENV_PATHS_ROOT }}
	key: ${{ runner.os }}-renv-${{ hashFiles('**/renv.lock') }}
	restore-keys: \|
	${{ runner.os }}-renv-

	- uses: r-lib/actions/setup-renv@v2

	# - name: Restore packages
	# shell: Rscript {0}
	# run: \|
	# if (!requireNamespace("renv", quietly = TRUE)) install.packages("renv")
	# renv::restore()

	- name: test specific packages
	run: \|
	Rscript -e 'install.packages("Rcpp")'
	Rscript -e 'install.packages("RcppArmadillo")'
	Rscript -e 'install.packages("DESeq2")'

	- name: Test if Shiny app starts
	run: \|
	Rscript -e "shiny::runApp('program/shinyApp', launch.browser = FALSE, port = 3838)"
	sleep 10 # Sleep for 10 seconds to ensure the app has time to start

Provide feedback