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add waiters show/hide to all R Code Download #351

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add waiters show/hide to all R Code Download #351

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57001a2
add waiters show/hide to all R Code Download
LeaSeep Oct 29, 2024
c69a50d
added explicit waiter; tried as reactive with waiter <- reactive({Wai…
LeaSeep Oct 30, 2024
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2 changes: 2 additions & 0 deletions program/shinyApp/R/enrichment_analysis/server.R
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Original file line number Diff line number Diff line change
Expand Up @@ -47,6 +47,7 @@ enrichment_analysis_geneset_server <- function(
paste0("ShinyOmics_Rcode2Reproduce_", Sys.Date(), ".zip")
},
content = function(file){
waiter$show()
# tmp <- getUserReactiveValues(input)
# par_tmp$Enrichment[names(tmp)] <<- tmp
envList <- list(
Expand Down Expand Up @@ -81,6 +82,7 @@ enrichment_analysis_geneset_server <- function(
files = dir(temp_directory),
root = temp_directory
)
waiter$hide()
},
contentType = "application/zip"
)
Expand Down
2 changes: 2 additions & 0 deletions program/shinyApp/R/heatmap/server.R
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Original file line number Diff line number Diff line change
Expand Up @@ -284,6 +284,7 @@ heatmap_server <- function(id, data, params, updates){
paste0("ShinyOmics_Rcode2Reproduce_", Sys.Date(), ".zip")
},
content = function(file){
waiter$show()
envList <- list(
res_tmp = res_tmp[[session$token]],
par_tmp = par_tmp[[session$token]]
Expand Down Expand Up @@ -311,6 +312,7 @@ heatmap_server <- function(id, data, params, updates){
files = dir(temp_directory),
root = temp_directory
)
waiter$hide()
},
contentType = "application/zip"
)
Expand Down
11 changes: 9 additions & 2 deletions program/shinyApp/R/pca/server.R
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Original file line number Diff line number Diff line change
Expand Up @@ -472,13 +472,12 @@ pca_Server <- function(id, data, params, row_select){
par_tmp[[session$token]]$PCA[names(tmp)] <<- tmp
par_tmp[[session$token]]$PCA$colorTheme <<- colorTheme



output$getR_Code_PCA <- downloadHandler(
filename = function(){
paste0("ShinyOmics_Rcode2Reproduce_", Sys.Date(), ".zip")
},
content = function(file){
waiter$show()
envList <- list(
res_tmp = res_tmp[[session$token]],
par_tmp = par_tmp[[session$token]]
Expand All @@ -494,7 +493,9 @@ pca_Server <- function(id, data, params, row_select){
files = dir(temp_directory),
root = temp_directory
)
waiter$hide()
},

contentType = "application/zip"
)

Expand Down Expand Up @@ -574,6 +575,7 @@ pca_Server <- function(id, data, params, row_select){
paste0("ShinyOmics_Rcode2Reproduce_", Sys.Date(), ".zip")
},
content = function(file){
waiter$show()

envList <- list(
res_tmp = res_tmp[[session$token]],
Expand All @@ -592,6 +594,7 @@ pca_Server <- function(id, data, params, row_select){
files = dir(temp_directory),
root = temp_directory
)
waiter$hide()
},
contentType = "application/zip"
)
Expand Down Expand Up @@ -651,6 +654,7 @@ pca_Server <- function(id, data, params, row_select){
paste0("ShinyOmics_Rcode2Reproduce_", Sys.Date(), ".zip")
},
content = function(file){
waiter$show()
envList <- list(

res_tmp = res_tmp[[session$token]],
Expand All @@ -669,6 +673,7 @@ pca_Server <- function(id, data, params, row_select){
files = dir(temp_directory),
root = temp_directory
)
waiter$hide()
},
contentType = "application/zip"
)
Expand Down Expand Up @@ -736,6 +741,7 @@ pca_Server <- function(id, data, params, row_select){
paste0("ShinyOmics_Rcode2Reproduce_", Sys.Date(), ".zip")
},
content = function(file){
waiter$show()
envList <- list(

res_tmp = res_tmp[[session$token]],
Expand All @@ -754,6 +760,7 @@ pca_Server <- function(id, data, params, row_select){
files = dir(temp_directory),
root = temp_directory
)
waiter$hide()
},
contentType = "application/zip"
)
Expand Down
2 changes: 2 additions & 0 deletions program/shinyApp/R/sample_correlation/server.R
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Original file line number Diff line number Diff line change
Expand Up @@ -164,6 +164,7 @@ sample_correlation_server <- function(id, data, params){
output$getR_SampleCorrelation <- downloadHandler(
filename = function(){ paste0("ShinyOmics_Rcode2Reproduce_", Sys.Date(), ".zip")},
content = function(file){
waiter$show()
envList <- list(

res_tmp = res_tmp[[session$token]],
Expand All @@ -183,6 +184,7 @@ sample_correlation_server <- function(id, data, params){
files = dir(temp_directory),
root = temp_directory
)
waiter$hdie()
},
contentType = "application/zip"
)
Expand Down
2 changes: 2 additions & 0 deletions program/shinyApp/R/significance_analysis/server.R
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Original file line number Diff line number Diff line change
Expand Up @@ -520,6 +520,7 @@ significance_analysis_server <- function(id, data, params){
paste0("ShinyOmics_Rcode2Reproduce_", Sys.Date(), ".zip")
},
content = function(file){
waiter$show()
tmp <- getUserReactiveValues(input)
par_tmp[[session$token]]$SigAna[names(tmp)] <<- tmp

Expand Down Expand Up @@ -579,6 +580,7 @@ significance_analysis_server <- function(id, data, params){
files = dir(temp_directory),
root = temp_directory
)
waiter$hide()
},
contentType = "application/zip"
)
Expand Down
8 changes: 8 additions & 0 deletions program/shinyApp/R/significance_analysis/util.R
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Original file line number Diff line number Diff line change
Expand Up @@ -398,6 +398,7 @@ create_new_tab_manual <- function(title, targetPanel, result, contrast, alpha, n
paste0("ShinyOmics_Rcode2Reproduce_", Sys.Date(), ".zip")
},
content = function(file){
waiter$show()
tmp <- getUserReactiveValues(input)
par_tmp[[session$token]]$SigAna[names(tmp)] <<- tmp
par_tmp[[session$token]]$SigAna$contrast <<- contrast
Expand Down Expand Up @@ -441,6 +442,7 @@ create_new_tab_manual <- function(title, targetPanel, result, contrast, alpha, n
files = dir(temp_directory),
root = temp_directory
)
waiter$hide()
},
contentType = "application/zip"
)
Expand All @@ -451,6 +453,7 @@ create_new_tab_manual <- function(title, targetPanel, result, contrast, alpha, n
paste0("ShinyOmics_Rcode2Reproduce_", Sys.Date(), ".zip")
},
content = function(file){
waiter$show()
tmp <- getUserReactiveValues(input)
par_tmp[[session$token]]$SigAna[names(tmp)] <<- tmp
par_tmp[[session$token]]$SigAna$contrast <<- contrast
Expand Down Expand Up @@ -494,6 +497,7 @@ create_new_tab_manual <- function(title, targetPanel, result, contrast, alpha, n
files = dir(temp_directory),
root = temp_directory
)
waiter$hide()
},
contentType = "application/zip"
)
Expand Down Expand Up @@ -930,6 +934,7 @@ create_new_tab_DESeq <- function(title, targetPanel, result, contrast, alpha, ns
paste0("ShinyOmics_Rcode2Reproduce_", Sys.Date(), ".zip")
},
content = function(file){
waiter$show()
tmp <- getUserReactiveValues(input)
par_tmp[[session$token]]$SigAna[names(tmp)] <<- tmp
par_tmp[[session$token]]$SigAna$contrast <<- contrast
Expand Down Expand Up @@ -973,6 +978,7 @@ create_new_tab_DESeq <- function(title, targetPanel, result, contrast, alpha, ns
files = dir(temp_directory),
root = temp_directory
)
waiter$hide()
},
contentType = "application/zip"
)
Expand All @@ -983,6 +989,7 @@ create_new_tab_DESeq <- function(title, targetPanel, result, contrast, alpha, ns
paste0("ShinyOmics_Rcode2Reproduce_", Sys.Date(), ".zip")
},
content = function(file){
waiter$show()
tmp <- getUserReactiveValues(input)
par_tmp[[session$token]]$SigAna[names(tmp)] <<- tmp
par_tmp[[session$token]]$SigAna$contrast <<- contrast
Expand Down Expand Up @@ -1026,6 +1033,7 @@ create_new_tab_DESeq <- function(title, targetPanel, result, contrast, alpha, ns
files = dir(temp_directory),
root = temp_directory
)
waiter$hide()
},
contentType = "application/zip"
)
Expand Down
2 changes: 2 additions & 0 deletions program/shinyApp/R/single_gene_visualisation/server.R
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Original file line number Diff line number Diff line change
Expand Up @@ -265,6 +265,7 @@ single_gene_visualisation_server <- function(id, data){
paste0("ShinyOmics_Rcode2Reproduce_", Sys.Date(), ".zip")
},
content = function(file){
waiter$show()
envList <- list(

res_tmp = res_tmp[[session$token]],
Expand All @@ -281,6 +282,7 @@ single_gene_visualisation_server <- function(id, data){
files = dir(temp_directory),
root = temp_directory
)
waiter$hide()
},
contentType = "application/zip"
)
Expand Down
2 changes: 2 additions & 0 deletions program/shinyApp/server.R
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Original file line number Diff line number Diff line change
Expand Up @@ -1247,6 +1247,7 @@ server <- function(input,output,session){
paste0("ShinyOmics_Rcode2Reproduce_", Sys.Date(), ".zip")
},
content = function(file) {
waiter$show()
envList <- list(
res_tmp = res_tmp[[session$token]],
par_tmp = par_tmp[[session$token]]
Expand All @@ -1266,6 +1267,7 @@ server <- function(input,output,session){
files = dir(temp_directory),
root = temp_directory
)
waiter$hide()
},
contentType = "application/zip"
)
Expand Down
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