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CMakeLists.txt
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CMakeLists.txt
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cmake_minimum_required(VERSION 3.15) # pkg_search_module GLOBAL
cmake_policy(VERSION 3.15...3.28)
if(POLICY CMP0074)
# Use package_ROOT environment variables
cmake_policy(SET CMP0074 NEW)
endif(POLICY CMP0074)
project(parpe)
set(CMAKE_MODULE_PATH "${CMAKE_CURRENT_LIST_DIR}/cmake/")
set(CMAKE_CXX_STANDARD 17)
set(CMAKE_CXX_STANDARD_REQUIRED True)
include(BuildType) # Ensure CMAKE_BUILD_TYPE is always set
include(CTest)
set(CMAKE_DEBUG_POSTFIX "-dbg")
set(CMAKE_C_FLAGS "${CMAKE_C_FLAGS} -std=c99 -Wall -Wno-unused-function")
set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -Wall -Wno-unused-function")
if(BUILD_PYTHON_MODULE)
# Build PIC code to be used for swig/python module
set(CMAKE_POSITION_INDEPENDENT_CODE ON)
endif()
# <versioning>
# Version number from git
add_custom_target(get_version ALL
COMMAND "${CMAKE_COMMAND}"
"-DINFILE=${PROJECT_SOURCE_DIR}/src/parpecommon/parpeVersion.h.in"
"-DOUTFILE=${CMAKE_BINARY_DIR}/src/parpecommon/parpeVersion.h"
"-P" "${PROJECT_SOURCE_DIR}/cmake/ConfigureVersion.cmake")
include("getVersion")
include("split_version")
split_version(${PARPE_VERSION} libname major minor patch)
# </versioning>
# <Build options>
set(BUILD_EXAMPLES TRUE CACHE BOOL "Build examples?")
set(BUILD_DOCS FALSE CACHE BOOL "Generate documentation?")
set(BUILD_PYTHON_MODULE FALSE CACHE BOOL "Build Python module?")
set(BLAS "CBLAS" CACHE STRING "BLAS library to use")
set_property(CACHE BLAS PROPERTY STRINGS "CBLAS" "MKL")
set(PARPE_ENABLE_MPI TRUE CACHE BOOL "Use MPI?")
set(PARPE_ENABLE_FIDES FALSE CACHE BOOL "Enable fides optimizer?")
set(PARPE_ENABLE_IPOPT TRUE CACHE BOOL "Enable ipopt optimizer?")
set(PARPE_ENABLE_CERES TRUE CACHE BOOL "Enable ceres optimizer?")
set(PARPE_ENABLE_DLIB FALSE CACHE BOOL "Enable dlib optimizers?")
set(PARPE_ENABLE_TOMS611 FALSE CACHE BOOL "Enable toms611 optimizer?")
set(PARPE_ENABLE_FSQP FALSE CACHE BOOL "Enable FSQP optimizer?")
set(PARPE_EXPORT_PACKAGE FALSE CACHE BOOL
"Export this build to CMake registry?")
set(PARPE_BUILD_OPTIMIZED TRUE CACHE BOOL "Optimize for current CPU?")
if(${PARPE_BUILD_OPTIMIZED})
include(BuildOptimized)
endif(${PARPE_BUILD_OPTIMIZED})
# OpenMP?
find_package(OpenMP)
# Enable MPI?
if(${PARPE_ENABLE_MPI})
find_package(MPI REQUIRED)
endif(${PARPE_ENABLE_MPI})
# </Build options>
if(${PARPE_ENABLE_FIDES})
find_package(Fides REQUIRED)
endif(${PARPE_ENABLE_FIDES})
find_package(PkgConfig)
pkg_search_module(IPOPT REQUIRED IMPORTED_TARGET GLOBAL ipopt>=3.11.0 )
if(${PARPE_ENABLE_DLIB})
set(DLIB_DIR "${CMAKE_CURRENT_LIST_DIR}/ThirdParty/dlib-19.7"
CACHE PATH "DLIB base directory")
endif(${PARPE_ENABLE_DLIB})
# HDF5
#set(HDF5_PREFER_PARALLEL TRUE)
find_package(HDF5 COMPONENTS CXX C HL REQUIRED)
set(HDF5_LIBRARIES
${HDF5_HL_LIBRARIES} ${HDF5_C_LIBRARIES} ${HDF5_CXX_LIBRARIES})
# Guidelines Support Library (GSL-lite) directory
set(GSL_INCLUDE_DIRS "${CMAKE_SOURCE_DIR}/ThirdParty/gsl")
# Throw on contract violation instead of terminate to get more meaningful
# message
add_definitions(-Dgsl_CONFIG_CONTRACT_VIOLATION_THROWS)
# Build tests?
if(${BUILD_TESTING})
enable_testing()
# --allow-run-as-root is required for running on shippable systems
set(TESTS_MPIEXEC_COMMAND
mpiexec --allow-run-as-root --oversubscribe -n 4 CACHE STRING "")
# <Coverage>
# Create test coverage reports?
set(GCOV_REPORT FALSE CACHE BOOL "Create GCOV report?")
set(GCOVR_REPORT FALSE CACHE BOOL "Create GCOVR report?")
set(COVERAGE_DEPENDENCIES
unittests_common unittests_amici unittests_loadbalancer
unittests_optimization)
if(${GCOV_REPORT})
if(${CMAKE_COMPILER_IS_GNUCXX})
# NOTE: LCOV uses absolute paths for exclusion
# arguments must be enclosed in single quotes
set(COVERAGE_EXCLUDES
'/usr/*' '${CMAKE_CURRENT_LIST_DIR}/ThirdParty/*'
'${CMAKE_CURRENT_LIST_DIR}/deps/*'
'${CMAKE_CURRENT_LIST_DIR}/examples/*')
set(GCOV_LIBRARY gcov)
include(CodeCoverage)
APPEND_COVERAGE_COMPILER_FLAGS()
setup_target_for_coverage(
NAME ${PROJECT_NAME}_coverage
EXECUTABLE ctest
DEPENDENCIES ${COVERAGE_DEPENDENCIES})
else()
message(WARNING "Not creating coverage report, because compiler "
"is not GCC but ${CMAKE_CXX_COMPILER_ID}.")
endif()
endif()
if(${GCOVR_REPORT})
if(${CMAKE_COMPILER_IS_GNUCXX})
# NOTE: GCOVR uses regexs on relative paths from
# ${PROJECT_BINARY_DIR} for exclusion
set(COVERAGE_EXCLUDES "^ThirdParty/" "^deps/" "^examples/")
set(GCOV_LIBRARY gcov)
include(CodeCoverage)
APPEND_COVERAGE_COMPILER_FLAGS()
setup_target_for_coverage_cobertura(
NAME ${PROJECT_NAME}_coverage_cobertura
EXECUTABLE ctest
DEPENDENCIES ${COVERAGE_DEPENDENCIES})
else()
message(WARNING "Not creating coverage report, because compiler "
"is not GCC but ${CMAKE_CXX_COMPILER_ID}.")
endif()
endif()
# </Coverage>
endif(${BUILD_TESTING})
# <Documentation (doxygen)>
if(BUILD_DOCS)
find_package(Doxygen)
if(NOT DOXYGEN_FOUND)
message(FATAL_ERROR "Doxygen is needed to build the documentation.")
endif()
set(doxyfile_in ${CMAKE_CURRENT_LIST_DIR}/doc/Doxyfile.in)
set(doxyfile ${CMAKE_CURRENT_LIST_DIR}/doc/Doxyfile)
configure_file(${doxyfile_in} ${doxyfile} @ONLY)
add_custom_target(doc
COMMAND ${DOXYGEN_EXECUTABLE} ${doxyfile}
COMMAND cd "${CMAKE_CURRENT_LIST_DIR}/doc/doxy/latex/"
&& pdflatex refman.tex
WORKING_DIRECTORY ${CMAKE_CURRENT_LIST_DIR}
COMMENT "Generating API documentation with Doxygen"
VERBATIM)
endif()
# </Documentation (doxygen)>
include(clang-tools)
# calc lines of code
add_custom_target(cloc
COMMAND cloc misc src include examples --fullpath
--not-match-d=amici/examples/steadystate/model/*
WORKING_DIRECTORY ${CMAKE_CURRENT_LIST_DIR}
COMMENT "Counting lines of code"
VERBATIM)
add_subdirectory(templates)
add_subdirectory(src)
if(${BUILD_TESTING})
add_subdirectory(tests)
endif()
if(${BUILD_EXAMPLES})
add_subdirectory(examples)
endif()
if(BUILD_PYTHON_MODULE AND CMAKE_BUILD_TYPE MATCHES Debug)
# Only build swig/python module when we are in debug mode
# This requires PIC, but we don't want PIC for release build at the moment
add_subdirectory(swig)
endif()
# create single library
add_library(${PROJECT_NAME} /dev/null)
target_link_libraries(${PROJECT_NAME}
PUBLIC parpecommon parpeloadbalancer parpeoptimization parpeamici)
# <Export cmake configuration>
install(TARGETS ${PROJECT_NAME} EXPORT ParPETargets
LIBRARY DESTINATION lib
ARCHIVE DESTINATION lib
RUNTIME DESTINATION bin
INCLUDES DESTINATION include
)
export(EXPORT ParPETargets
#DESTINATION "lib/cmake"
NAMESPACE "Upstream::"
FILE "ParPETargets.cmake"
)
install(FILES "${CMAKE_CURRENT_BINARY_DIR}/ParPETargets.cmake"
DESTINATION "lib/cmake")
set(LIB_INSTALL_DIR lib)
include(CMakePackageConfigHelpers)
configure_package_config_file(
"cmake/ParPEConfig.cmake.in"
"${CMAKE_CURRENT_BINARY_DIR}/ParPEConfig.cmake"
INSTALL_DESTINATION "${LIB_INSTALL_DIR}/cmake/")
write_basic_package_version_file(
"${CMAKE_CURRENT_BINARY_DIR}/ParPEConfigVersion.cmake"
VERSION "${major}.${minor}.${patch}"
COMPATIBILITY ExactVersion)
install(
FILES
"${CMAKE_CURRENT_BINARY_DIR}/ParPEConfig.cmake"
"${CMAKE_CURRENT_BINARY_DIR}/ParPEConfigVersion.cmake"
DESTINATION "${LIB_INSTALL_DIR}/cmake/")
# Register package
if(${PARPE_EXPORT_PACKAGE})
export(PACKAGE ParPE)
endif(${PARPE_EXPORT_PACKAGE})
# </Export cmake configuration>
# <Package configuration>
set (CPACK_PACKAGE_VERSION_MAJOR "${major}")
set (CPACK_PACKAGE_VERSION_MINOR "${minor}")
set (CPACK_PACKAGE_VERSION_PATCH "${patch}")
include (CPack)
# </Package configuration>