Skip to content

Issues: ICB-DCM/parPE

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

60 Open 142 Closed
60 Open 142 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Fix find_package / find_dependency issues with different SuiteSparse versions from amici and ceres
#391 opened Oct 14, 2024 by dweindl
Upgrade dockerhub image and GHA to use Ubuntu 24.04
#389 opened Oct 11, 2024 by dweindl
1
@dweindl
PEtab pipeline: Only compute sensitivities with respect to optimized parameters PEtab
#380 opened Dec 12, 2023 by dweindl
@dweindl
1
Converting result files to pypesto format enhancement Python
#349 opened Jul 12, 2021 by dweindl
1
@PaulJonasJost
Make HDF5 output more configurable C++ enhancement
#348 opened Jul 12, 2021 by dweindl
Support for forward sensitivities C++ enhancement
#343 opened Jun 15, 2021 by dweindl
@dweindl
Implement PEtab/PySB import
#325 opened Feb 21, 2021 by dweindl
gradient check CLI: allow specifying parameter index/ID C++ enhancement
#319 opened Feb 18, 2021 by dweindl
5 tasks
1
CI: extend benchmark collection tests to optimize, not only simulate with known parameters CI Python
#284 opened May 15, 2020 by dweindl
Add singularity definition file
#277 opened Apr 24, 2020 by dweindl
L1/elastic net regularisation
#274 opened Apr 18, 2020 by paulflang
1
Add gradient check for PEtab test suite models CI PEtab
#245 opened Mar 14, 2020 by dweindl
Save current parameter vector before cost function evaluation C++ enhancement
#228 opened Jan 21, 2020 by dweindl
add option to not copy parameter estimation input to result file C++ enhancement
#227 opened Jan 17, 2020 by dweindl
Verify optimal values reported by ipopt C++
#221 opened Dec 19, 2019 by dweindl
1
generateHDF5DataFileFromText.py takes ages Python
#219 opened Dec 18, 2019 by dweindl
Use docker credential helper in deploy action CI
#217 opened Dec 15, 2019 by dweindl
Cleanup and document python library enhancement Python
#213 opened Dec 13, 2019 by dweindl
Extend snakemake workflow for result visualization enhancement Python
#196 opened Oct 8, 2019 by dweindl
Add option to (not) write simulation results by workers C++ enhancement
#192 opened Jul 24, 2019 by dweindl
Add option to save llh gradients for each condition C++ enhancement
#191 opened Jul 24, 2019 by dweindl
During hierarchical optimization, don't compute sensitivities w.r.t. analytically computed parameters C++ enhancement
#190 opened Jun 28, 2019 by dweindl
Test hybrid MPI-OpenMP C++ enhancement
#188 opened Jun 20, 2019 by dweindl
Set version number in python package Python
#186 opened Jun 18, 2019 by dweindl
@dweindl
Test blaze for BLAS-like operations and handling of multidimensional arrays C++ enhancement
#184 opened Jun 2, 2019 by dweindl
ProTip! no:milestone will show everything without a milestone.