Updated PEtab.jl to work with version 3.x #4717

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Run time

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Job	Run time
hierarchical (3.10)	2m 48s
docs (3.11)	12m 28s
hierarchical (3.12)	3m 48s
base (3.10)	7m 52s
julia (3.10)	15m 1s
base (3.12)	8m 30s
julia (3.12)	15m 32s
mac (3.12)	15m 46s
notebooks1 (3.10)	7m 31s
notebooks2 (3.10)	4m 16s
optimize (3.12)	11m 37s
petab (3.10)	15m 52s
quality (3.12)	18s
petab (3.12)	19m 3s
select (3.10)	3m 46s
windows (3.12)	1m 52s
select (3.12)	4m 5s
	2h 30m 5s