Merge pull request #40 from ImagingDataCommons/idc_v11

HFS demo bucket generation code.

hfs/prop1/gen_blobs_1.py

@@ -74,7 +74,7 @@ def gen_collection_object(args, sess, collection):
     print(f'{level} {collection.uuid} completed')
     return
 
-def gen_studies(args):
+def gen_all(args):
 
     sql_uri = f'postgresql+psycopg2://{settings.CLOUD_USERNAME}:{settings.CLOUD_PASSWORD}@{settings.CLOUD_HOST}:{settings.CLOUD_PORT}/{settings.CLOUD_DATABASE}'
     # sql_engine = create_engine(sql_uri, echo=True)
@@ -102,4 +102,4 @@ def gen_studies(args):
     print(f'args: {json.dumps(args.__dict__, indent=2)}')
     args.dst_bucket = client.bucket(args.dst_bucket_name)
 
-    gen_studies(args)
+    gen_all(args)

hfs/prop3/collection_list_3.py

@@ -0,0 +1,17 @@
+#
+# Copyright 2015-2021, Institute for Systems Biology
+#
+# Licensed under the Apache License, Version 2.0 (the "License");
+# you may not use this file except in compliance with the License.
+# You may obtain a copy of the License at
+#
+#    http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing, software
+# distributed under the License is distributed on an "AS IS" BASIS,
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+# See the License for the specific language governing permissions and
+# limitations under the License.
+#
+
+collection_list = ['APOLLO-5-LSCC', 'MIDRC-RICORD-1C', 'TCGA-READ']