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fixed visualization of sample values (wrong key) #21

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fixed visualization of sample values (wrong key) #21

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7 changes: 3 additions & 4 deletions intrasom/visualization.py
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Original file line number Diff line number Diff line change
Expand Up @@ -588,16 +588,15 @@ def search_strings(search_list, target_list):
if samples_label:
if project_samples_label is not None:
samples_label_names = project_samples_label.index.tolist()
som_bmus = (project_samples_label.BMU.values-1).tolist()
rep_samples_dic = select_keys(self.rep_sample(project = project_samples_label), som_bmus)
som_bmus = project_samples_label.BMU.values.tolist()
rep_samples_dic = select_keys(self.rep_sample(project=project_samples_label), som_bmus)
else:
if samples_label_index == "all":
samples_label_names = self.sample_names
samples_label_index = np.arange(0, len(samples_label_names), 1)
else:
samples_label_index = np.array(samples_label_index)
samples_label_names = self.sample_names[samples_label_index]


som_bmus = self.bmus.astype(int)[samples_label_index]
rep_samples_dic = select_keys(self.rep_sample(), som_bmus+1)
Expand All @@ -620,7 +619,7 @@ def filter_dictionary(dictionary, values):
for key, value in rep_samples_dic_filter.items():
if isinstance(value, list):
value = ', '.join(value)
file.write(f'BMU {key+1}: {value}\n')
file.write(f'BMU {key}: {value}\n')

counter = 0
for j in range(self.mapsize[1]):
Expand Down