ENH: Update the version of tensorstore we use #171
Workflow file for this run
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| name: Build, test, package | |
| on: [push,pull_request] | |
| env: | |
| itk-git-tag: "v5.4.0" | |
| itk-wheel-tag: "v5.4.0" | |
| # v5.4.0 + fixes | |
| itk-python-package-tag: "c9bb40bcb9f99938d071435e46f44d3d2b389482" | |
| itk-python-package-org: "InsightSoftwareConsortium" | |
| ctest-options: "" | |
| jobs: | |
| build-test-cxx: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| max-parallel: 3 | |
| matrix: | |
| os: [ubuntu-22.04, windows-2022, macos-12, macos-14] | |
| include: | |
| - os: ubuntu-22.04 | |
| c-compiler: "gcc" | |
| cxx-compiler: "g++" | |
| cmake-build-type: "MinSizeRel" | |
| - os: windows-2022 | |
| c-compiler: "cl.exe" | |
| cxx-compiler: "cl.exe" | |
| cmake-build-type: "Release" | |
| - os: macos-12 | |
| c-compiler: "clang" | |
| cxx-compiler: "clang++" | |
| cmake-build-type: "MinSizeRel" | |
| - os: macos-14 | |
| c-compiler: "clang" | |
| cxx-compiler: "clang++" | |
| cmake-build-type: "MinSizeRel" | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Free Disk Space (Ubuntu) | |
| if: matrix.os == 'ubuntu-22.04' | |
| uses: jlumbroso/[email protected] | |
| with: | |
| large-packages: false | |
| - name: Set up Python 3.11 | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: "3.11" | |
| - uses: shogo82148/actions-setup-perl@v1 | |
| - uses: ilammy/setup-nasm@v1 | |
| - name: Get specific version of CMake, Ninja | |
| uses: lukka/[email protected] | |
| - name: 'Specific XCode version' | |
| if: matrix.os == 'macos-12' | |
| run: | | |
| sudo xcode-select -s "/Applications/Xcode_13.2.1.app" | |
| - name: 'Specific XCode version' | |
| if: matrix.os == 'macos-14' | |
| run: | | |
| sudo xcode-select -s "/Applications/Xcode_15.0.1.app" | |
| - name: Download ITK | |
| run: | | |
| cd .. | |
| git clone https://github.com/InsightSoftwareConsortium/ITK.git | |
| cd ITK | |
| git checkout ${{ env.itk-git-tag }} | |
| - name: Build ITK | |
| if: matrix.os != 'windows-2022' | |
| run: | | |
| cd .. | |
| mkdir ITK-build | |
| cd ITK-build | |
| cmake -DCMAKE_C_COMPILER:FILEPATH="${{ matrix.c-compiler }}" -DBUILD_SHARED_LIBS:BOOL=ON -DCMAKE_CXX_COMPILER="${{ matrix.cxx-compiler }}" -DCMAKE_BUILD_TYPE:STRING=${{ matrix.cmake-build-type }} -DBUILD_TESTING:BOOL=OFF -GNinja ../ITK | |
| ninja | |
| - name: Build ITK | |
| if: matrix.os == 'windows-2022' | |
| shell: pwsh | |
| run: | | |
| Set-PSDebug -Trace 1 | |
| cd .. | |
| & "C:\Program Files\Microsoft Visual Studio\2022\Enterprise\Common7\Tools\Launch-VsDevShell.ps1" -Arch amd64 -SkipAutomaticLocation | |
| mkdir ITK-build | |
| cd ITK-build | |
| cmake -DCMAKE_C_COMPILER:FILEPATH="${{ matrix.c-compiler }}" -DBUILD_SHARED_LIBS:BOOL=ON -DCMAKE_CXX_COMPILER="${{ matrix.cxx-compiler }}" -DCMAKE_BUILD_TYPE:STRING=${{ matrix.cmake-build-type }} -DBUILD_TESTING:BOOL=OFF -GNinja ../ITK | |
| ninja | |
| - name: Fetch CTest driver script | |
| run: | | |
| curl -L https://raw.githubusercontent.com/InsightSoftwareConsortium/ITK/dashboard/itk_common.cmake -O | |
| - name: Configure CTest script | |
| shell: bash | |
| run: | | |
| operating_system="${{ matrix.os }}" | |
| cat > dashboard.cmake << EOF | |
| set(CTEST_SITE "GitHubActions") | |
| file(TO_CMAKE_PATH "\$ENV{GITHUB_WORKSPACE}/.." CTEST_DASHBOARD_ROOT) | |
| file(TO_CMAKE_PATH "\$ENV{GITHUB_WORKSPACE}/" CTEST_SOURCE_DIRECTORY) | |
| file(TO_CMAKE_PATH "\$ENV{GITHUB_WORKSPACE}/../build" CTEST_BINARY_DIRECTORY) | |
| set(dashboard_source_name "${GITHUB_REPOSITORY}") | |
| if((ENV{GITHUB_REF_NAME} MATCHES "master" OR ENV{GITHUB_REF_NAME} MATCHES "main")) | |
| set(branch "-master") | |
| set(dashboard_model "Continuous") | |
| else() | |
| set(branch "-${GITHUB_REF}") | |
| set(dashboard_model "Experimental") | |
| endif() | |
| set(CTEST_BUILD_NAME "${GITHUB_REPOSITORY}-${operating_system}-\${branch}") | |
| set(CTEST_UPDATE_VERSION_ONLY 1) | |
| set(CTEST_TEST_ARGS \${CTEST_TEST_ARGS} PARALLEL_LEVEL \${PARALLEL_LEVEL}) | |
| set(CTEST_BUILD_CONFIGURATION "Release") | |
| set(CTEST_CMAKE_GENERATOR "Ninja") | |
| set(CTEST_CUSTOM_WARNING_EXCEPTION | |
| \${CTEST_CUSTOM_WARNING_EXCEPTION} | |
| # macOS Azure VM Warning | |
| "ld: warning: text-based stub file" | |
| "Wunused-result" | |
| "file: .+ has no symbols" | |
| "Wpointer-bool-conversion" | |
| "note: prefix with the address-of operator to silence this warning" | |
| "warning C4722: 'riegeli::internal::UnreachableStream::~UnreachableStream': destructor never returns, potential memory leak" | |
| "warning C4722: 'riegeli::internal::CheckFailed::~CheckFailed': destructor never returns, potential memory leak" | |
| "_deps[/\\\\].+-src[/\\\\]" # disable all warnings from external projects | |
| "_deps[/\\\\].+-build[/\\\\]" # disable all warnings from external projects | |
| # the following warnings escape the above filter | |
| "warning: Import validate/validate.proto is unused" | |
| "warning:.+__builtin___memcpy_chk" | |
| "warning:.+__builtin_memchr" | |
| "warning:.+__builtin_memcpy" | |
| "ld: warning: ignoring duplicate libraries:.+" | |
| "cc1plus: warning: writing 16 bytes into a region of size 0" | |
| "note: source object allocated here" | |
| ) | |
| set(dashboard_no_clean 1) | |
| set(ENV{CC} ${{ matrix.c-compiler }}) | |
| set(ENV{CXX} ${{ matrix.cxx-compiler }}) | |
| if(WIN32) | |
| set(ENV{PATH} "\${CTEST_DASHBOARD_ROOT}/ITK-build/bin;\$ENV{PATH}") | |
| endif() | |
| set(dashboard_cache " | |
| ITK_DIR:PATH=\${CTEST_DASHBOARD_ROOT}/ITK-build | |
| BUILD_TESTING:BOOL=ON | |
| ") | |
| string(TIMESTAMP build_date "%Y-%m-%d") | |
| message("CDash Build Identifier: \${build_date} \${CTEST_BUILD_NAME}") | |
| message("CTEST_SITE = \${CTEST_SITE}") | |
| include(\${CTEST_SCRIPT_DIRECTORY}/itk_common.cmake) | |
| EOF | |
| cat dashboard.cmake | |
| - name: Build and test | |
| if: matrix.os != 'windows-2022' | |
| run: | | |
| ctest --output-on-failure -j 2 -V -S dashboard.cmake ${{ env.ctest-options }} | |
| - name: Build and test | |
| if: matrix.os == 'windows-2022' | |
| shell: pwsh | |
| run: | | |
| & "C:\Program Files\Microsoft Visual Studio\2022\Enterprise\Common7\Tools\Launch-VsDevShell.ps1" -Arch amd64 -SkipAutomaticLocation | |
| ctest --output-on-failure -j 2 -V -S dashboard.cmake ${{ env.ctest-options }} | |
| build-linux-py: | |
| runs-on: ubuntu-22.04 | |
| strategy: | |
| max-parallel: 2 | |
| matrix: | |
| python3-minor-version: ["8", "9", "10", "11"] | |
| manylinux-platform: ["_2_28-x64"] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Get specific version of CMake, Ninja | |
| uses: lukka/[email protected] | |
| - name: Free Disk Space (Ubuntu) | |
| uses: jlumbroso/[email protected] | |
| with: | |
| large-packages: false | |
| - uses: shogo82148/actions-setup-perl@v1 | |
| - uses: ilammy/setup-nasm@v1 | |
| - name: 'Fetch build script' | |
| run: | | |
| IPP_DOWNLOAD_GIT_TAG=${{ env.itk-python-package-tag }} | |
| IPP_DOWNLOAD_ORG=${{ env.itk-python-package-org }} | |
| curl -L https://raw.githubusercontent.com/${IPP_DOWNLOAD_ORG:=InsightSoftwareConsortium}/ITKPythonPackage/${IPP_DOWNLOAD_GIT_TAG:=master}/scripts/dockcross-manylinux-download-cache-and-build-module-wheels.sh -O | |
| chmod u+x dockcross-manylinux-download-cache-and-build-module-wheels.sh | |
| - name: 'Build 🐍 Python 📦 package' | |
| shell: bash | |
| run: | | |
| rm -rf dist | |
| export ITK_PACKAGE_VERSION=${{ env.itk-wheel-tag }} | |
| export ITKPYTHONPACKAGE_TAG=${{ env.itk-python-package-tag }} | |
| export ITKPYTHONPACKAGE_ORG=${{ env.itk-python-package-org }} | |
| export ITK_MODULE_PREQ= | |
| CMAKE_OPTIONS="" | |
| MANYLINUX_PLATFORM=${{ matrix.manylinux-platform }} | |
| echo "Manylinux platform ${MANYLINUX_PLATFORM}" | |
| rm -rf ITKPythonPackage | |
| export MANYLINUX_VERSION=`(echo ${MANYLINUX_PLATFORM} | cut -d '-' -f 1)` | |
| export TARGET_ARCH=`(echo ${MANYLINUX_PLATFORM} | cut -d '-' -f 2)` | |
| echo "Building for manylinux specialization ${MANYLINUX_VERSION} and target architecture ${TARGET_ARCH}" | |
| ./dockcross-manylinux-download-cache-and-build-module-wheels.sh cp3${{ matrix.python3-minor-version }} $CMAKE_OPTIONS | |
| - name: Set up Python 3.11 for Validation | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: "3.11" | |
| - name: Validate build output | |
| shell: bash | |
| run: | | |
| python -m pip install twine | |
| ls dist/ | |
| MANYLINUX_PLATFORM=${{ matrix.manylinux-platform }} | |
| MANYLINUX_VERSION=`(echo ${MANYLINUX_PLATFORM} | cut -d '-' -f 1)` | |
| TARGET_ARCH_NAME=`(echo ${MANYLINUX_PLATFORM} | cut -d '-' -f 2)` | |
| if [[ ${TARGET_ARCH_NAME} == "x64" ]]; then | |
| TARGET_ARCH_NAME="x86_64" # Match auditwheel naming convention | |
| fi | |
| WHEEL_PATTERN="dist/itk_*cp3${{ matrix.python3-minor-version }}*manylinux${MANYLINUX_VERSION}*${TARGET_ARCH_NAME}.whl" | |
| echo "Searching for wheels matching pattern ${WHEEL_PATTERN}" | |
| python -m twine check ${WHEEL_PATTERN} | |
| - name: Publish Python package as GitHub Artifact | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: LinuxWheel3${{ matrix.python3-minor-version }}${{ matrix.manylinux-platform }} | |
| path: dist/*.whl | |
| - name: Publish Python package as GitHub Artifact | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: MacOSWheel3${{ matrix.python3-minor-version }} | |
| path: dist/*.whl | |
| build-macos-arm-py: | |
| runs-on: macos-14 | |
| strategy: | |
| max-parallel: 2 | |
| matrix: | |
| python3-minor-version: ["9", "10", "11"] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: 'Specific XCode version' | |
| run: | | |
| sudo xcode-select -s "/Applications/Xcode_15.0.1.app" | |
| - name: Get specific version of CMake, Ninja | |
| uses: lukka/[email protected] | |
| - uses: shogo82148/actions-setup-perl@v1 | |
| - uses: ilammy/setup-nasm@v1 | |
| - name: 'Fetch build script' | |
| if: matrix.python3-minor-version != '8' | |
| run: | | |
| IPP_DOWNLOAD_GIT_TAG=${{ env.itk-python-package-tag }} | |
| IPP_DOWNLOAD_ORG=${{ env.itk-python-package-org }} | |
| curl -L https://raw.githubusercontent.com/${IPP_DOWNLOAD_ORG:=InsightSoftwareConsortium}/ITKPythonPackage/${IPP_DOWNLOAD_GIT_TAG:=master}/scripts/macpython-download-cache-and-build-module-wheels.sh -O | |
| chmod u+x macpython-download-cache-and-build-module-wheels.sh | |
| - name: 'Build 🐍 Python 📦 package' | |
| if: matrix.python3-minor-version != '8' | |
| shell: bash | |
| run: | | |
| rm -rf dist | |
| export ITK_PACKAGE_VERSION=${{ env.itk-wheel-tag }} | |
| export ITKPYTHONPACKAGE_TAG=${{ env.itk-python-package-tag }} | |
| export ITKPYTHONPACKAGE_ORG=${{ env.itk-python-package-org }} | |
| export ITK_MODULE_PREQ= | |
| export MACOSX_DEPLOYMENT_TARGET=11.0 | |
| SCMAKE_OPTIONS="" | |
| ./macpython-download-cache-and-build-module-wheels.sh $CMAKE_OPTIONS "3.${{ matrix.python3-minor-version }}" | |
| - name: Set up Python 3.11 for Validation | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: "3.11" | |
| - name: Validate build output | |
| if: matrix.python3-minor-version != '8' | |
| shell: bash | |
| run: | | |
| python -m pip install twine | |
| ls dist/ | |
| WHEEL_PATTERN="dist/itk_*macosx*.whl" | |
| EXPECTED_WHEEL_COUNT=1 | |
| WHEEL_COUNT=`(ls ${WHEEL_PATTERN} | wc -l)` | |
| if (( ${WHEEL_COUNT} != ${EXPECTED_WHEEL_COUNT} )); then | |
| echo "Expected ${EXPECTED_WHEEL_COUNT} wheels but found ${WHEEL_COUNT}" | |
| exit 1 | |
| fi | |
| python -m twine check ${WHEEL_PATTERN} | |
| - name: Publish Python package as GitHub Artifact | |
| if: matrix.python3-minor-version != '8' | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: MacOSArmWheel3${{ matrix.python3-minor-version }} | |
| path: dist/*.whl | |
| build-windows-python-packages: | |
| runs-on: windows-2022 | |
| strategy: | |
| max-parallel: 2 | |
| matrix: | |
| python3-minor-version: ["8", "9", "10", "11"] | |
| steps: | |
| - name: Get specific version of CMake, Ninja | |
| uses: lukka/[email protected] | |
| - uses: actions/checkout@v4 | |
| with: | |
| path: "im" | |
| - name: 'Reduce source path length' | |
| shell: bash | |
| run: | | |
| # Move checked-out source to a shorter path to avoid Windows path length issues | |
| mv im ../../ | |
| - name: 'Fetch build script' | |
| shell: pwsh | |
| run: | | |
| cd ../../im | |
| $ITKPYTHONPACKAGE_TAG = "${{ env.itk-python-package-tag }}" | |
| $ITKPYTHONPACKAGE_ORG = "${{ env.itk-python-package-org }}" | |
| $SCRIPT_UPSTREAM = "https://raw.githubusercontent.com/$ITKPYTHONPACKAGE_ORG/ITKPythonPackage/$ITKPYTHONPACKAGE_TAG/scripts/windows-download-cache-and-build-module-wheels.ps1" | |
| echo "Fetching $SCRIPT_UPSTREAM" | |
| (new-object net.webclient).DownloadString($SCRIPT_UPSTREAM) > windows-download-cache-and-build-module-wheels.ps1 | |
| - uses: shogo82148/actions-setup-perl@v1 | |
| - uses: ilammy/setup-nasm@v1 | |
| - name: 'Build 🐍 Python 📦 package' | |
| shell: pwsh | |
| run: | | |
| if (Test-Path dist) { rm dist -r -fo } | |
| cd ../../im | |
| & "C:\Program Files\Microsoft Visual Studio\2022\Enterprise\Common7\Tools\Launch-VsDevShell.ps1" -Arch amd64 -SkipAutomaticLocation | |
| $env:CC="cl.exe" | |
| $env:CXX="cl.exe" | |
| $env:ITK_PACKAGE_VERSION = "${{ env.itk-wheel-tag }}" | |
| $env:ITKPYTHONPACKAGE_TAG = "${{ env.itk-python-package-tag }}" | |
| $env:ITKPYTHONPACKAGE_ORG = "${{ env.itk-python-package-org }}" | |
| $env:ITK_MODULE_PREQ = "" | |
| ./windows-download-cache-and-build-module-wheels.ps1 "${{ matrix.python3-minor-version }}" -cmake_options "" | |
| mkdir -p '${{ github.workspace }}\dist' | |
| cp 'dist\*.whl' '${{ github.workspace }}\dist' | |
| - name: Set up Python 3.11 for Validation | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: "3.11" | |
| - name: Validate build output | |
| shell: pwsh | |
| run: | | |
| python -m pip install twine | |
| ls dist/ | |
| $WHEEL_PATTERN = "dist/itk_*cp3${{ matrix.python3-minor-version }}*win*.whl" | |
| echo "Searching for wheels matching pattern ${WHEEL_PATTERN}" | |
| python -m twine check ${WHEEL_PATTERN} | |
| - name: Publish Python package as GitHub Artifact | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: WindowsWheel3${{ matrix.python3-minor-version }} | |
| path: dist/*.whl | |
| publish-python-packages-to-pypi: | |
| needs: | |
| - build-linux-py | |
| - build-macos-arm-py | |
| - build-windows-python-packages | |
| runs-on: ubuntu-22.04 | |
| steps: | |
| - name: Download Python Packages | |
| uses: actions/download-artifact@v4 | |
| - name: Prepare packages for upload | |
| run: | | |
| ls -R | |
| for d in */; do | |
| mv ${d}/*.whl . | |
| done | |
| mkdir dist | |
| mv *.whl dist/ | |
| ls dist | |
| - name: Publish 🐍 Python 📦 package to PyPI | |
| if: github.event_name == 'push' && startsWith(github.event.ref, 'refs/tags') | |
| uses: pypa/[email protected] | |
| with: | |
| skip_existing: true | |
| user: __token__ | |
| password: ${{ secrets.pypi_password }} |