Best Practices for Spatial Transcriptomics Analysis with Bioconductor

Repository containing source files for 'Best Practices for Spatial Transcriptomics Analysis with Bioconductor' online book.

Website

The website for the compiled version of the book is at: https://lmweber.org/BestPracticesST/

Source files

The main content of the book is in the Quarto .qmd files in the chapters/ subdirectory, with one .qmd file per chapter.

Rendering and publishing to the website uses the GitHub Actions workflow in: .github/workflows/

Render locally

Run quarto render to render the book locally.

Publish manually

Run quarto publish to render and publish to GitHub Pages manually (without using GitHub Actions workflow).