Update Ubuntu CI runner from old AWS c6i ParallelCluster to c6a single-node instance #11
Workflow file for this run
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| name: ubuntu-ci-c6a-x86_64-gnu-build | |
| on: | |
| pull_request: | |
| paths-ignore: | |
| - 'doc/**' | |
| - '**.md' | |
| - '.github/ISSUE_TEMPLATE/*' | |
| - '.gitignore' | |
| workflow_dispatch: | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.event.pull_request.number || github.ref }} | |
| cancel-in-progress: true | |
| defaults: | |
| run: | |
| shell: bash | |
| jobs: | |
| ubuntu-ci-c6a-x86_64-gnu-build: | |
| runs-on: [ubuntu-ci-c6a-x86_64] | |
| steps: | |
| - name: cleanup | |
| run: | | |
| pwd | |
| ls -lart | |
| rm -fr * | |
| - name: checkout | |
| uses: actions/checkout@v3 | |
| with: | |
| submodules: true | |
| - name: create-buildcache | |
| run: | | |
| source ./setup.sh | |
| export ENVNAME=ue-gcc-11.4.0-buildcache | |
| export ENVDIR=$PWD/envs/${ENVNAME} | |
| spack stack create env --site linux.default --template unified-dev --name ${ENVNAME} | |
| spack env activate ${ENVDIR} | |
| export SPACK_SYSTEM_CONFIG_PATH="${ENVDIR}/site" | |
| # Find external packages | |
| spack external find --scope system \ | |
| --exclude bison --exclude openssl \ | |
| --exclude curl --exclude python | |
| spack external find --scope system sed | |
| spack external find --scope system perl | |
| spack external find --scope system wget | |
| PATH="/usr/local/opt/qt5/bin:$PATH" \ | |
| spack external find --scope system qt | |
| spack external find --scope system texlive | |
| spack external find --scope system mysql | |
| # For GNU | |
| spack compiler find --scope system | |
| export -n SPACK_SYSTEM_CONFIG_PATH | |
| # For buildcaches | |
| spack config add config:install_tree:padded_length:200 | |
| # Set compiler and MPI | |
| # Set compiler and MPI - for GNU | |
| spack config add "packages:all:providers:mpi:[[email protected]]" | |
| spack config add "packages:all:compiler:[[email protected]]" | |
| sed -i "s/\['\%aocc', '\%apple-clang', '\%gcc', '\%intel'\]/\['\%gcc'\]/g" $ENVDIR/spack.yaml | |
| # Add additional variants for MET packages, different from config/common/packages.yaml | |
| spack config add "packages:met:variants:+python +grib2 +graphics +lidar2nc +modis" | |
| # Concretize and check for duplicates | |
| spack concretize 2>&1 | tee log.concretize.gnu-11.4.0-buildcache | |
| ${SPACK_STACK_DIR}/util/show_duplicate_packages.py -d log.concretize.gnu-11.4.0-buildcache -i fms -i crtm -i esmf -i mapl | |
| # Add and update source cache | |
| spack mirror add local-source file:///home/ubuntu/spack-stack/source-cache/ | |
| spack mirror create -a -d /home/ubuntu/spack-stack/source-cache/ | |
| # Add binary cache and reindex it | |
| spack mirror add local-binary file:///home/ubuntu/spack-stack/build-cache/ | |
| spack buildcache update-index local-binary | |
| echo "Packages in combined spack build caches:" | |
| spack buildcache list | |
| # Break installation up in pieces and create build caches in between | |
| # This allows us to "spin up" builds that altogether take longer than | |
| # six hours, and/or fail later in the build process. | |
| # base-env | |
| echo "base-env ..." | |
| spack install --fail-fast --source --no-check-signature base-env 2>&1 | tee log.install.gnu-11.4.0-buildcache.base-env | |
| spack buildcache create -a -u /home/ubuntu/spack-stack/build-cache/ base-env | |
| # jedi-base-env | |
| echo "jedi-base-env ..." | |
| spack install --fail-fast --source --no-check-signature jedi-base-env 2>&1 | tee log.install.gnu-11.4.0-buildcache.jedi-base-env | |
| spack buildcache create -a -u /home/ubuntu/spack-stack/build-cache/ jedi-base-env | |
| # the rest | |
| echo "unified-env ..." | |
| spack install --fail-fast --source --no-check-signature 2>&1 | tee log.install.gnu-11.4.0-buildcache.unified-env | |
| spack buildcache create -a -u /home/ubuntu/spack-stack/build-cache/ | |
| # Next steps: synchronize source and build cache to a central/combined mirror? | |
| - name: create-env | |
| run: | | |
| source ./setup.sh | |
| export BUILDCACHE_ENVNAME=ue-gcc-11.4.0-buildcache | |
| export BUILDCACHE_ENVDIR=$PWD/envs/${BUILDCACHE_ENVNAME} | |
| export ENVNAME=ue-gcc-11.4.0 | |
| export ENVDIR=$PWD/envs/${ENVNAME} | |
| rsync -av --exclude='install' --exclude='spack.lock' --exclude='.spack_db' ${BUILDCACHE_ENVDIR}/ ${ENVDIR}/ | |
| spack env activate ${ENVDIR} | |
| # Remove buildcache stuff, then concretize | |
| spack config remove config:install_tree:padded_length | |
| spack mirror remove local-binary | |
| # Concretize | |
| spack concretize --force 2>&1 | tee log.concretize.gnu-11.4.0 | |
| # Add binary cache back in and reindex it | |
| spack mirror add local-binary file:///home/ubuntu/spack-stack/build-cache/ | |
| echo "Packages in combined spack build caches:" | |
| spack buildcache list | |
| # base-env | |
| echo "base-env ..." | |
| spack install --fail-fast --source --no-check-signature 2>&1 | tee log.install.gnu-11.4.0.unified-env | |
| ${SPACK_STACK_DIR}/util/ldd_check.py $SPACK_ENV 2>&1 | tee log.ldd_check | |
| spack clean -a | |
| spack module tcl refresh -y | |
| spack stack setup-meta-modules | |
| spack env deactivate | |
| # Test environment chaining | |
| echo "Test environment chaining" | |
| spack stack create env --name chaintest --template empty --site linux.default --upstream $(realpath envs/${ENVNAME}/install) | |
| # Retain config from upstream so we don't have to rebuild: | |
| cp -r $PWD/envs/${ENVNAME}/{site,common} $PWD/envs/chaintest/. | |
| spack env activate ${PWD}/envs/chaintest | |
| spack add [email protected]%gcc | |
| spack concretize | tee envs/chaintest/log.concretize | |
| unwanted_duplicates=$(( cat envs/chaintest/log.concretize | grep -E '^ - ' | grep -Fv '[email protected]' || true ) | wc -l) | |
| if [ ${unwanted_duplicates} -gt 0 ]; then echo "Environment chaining test failed"; exit 1; fi | |
| spack env deactivate | |
| - name: test-env | |
| run: | | |
| source /etc/profile.d/modules.sh | |
| module use /home/ubuntu/spack-stack/modulefiles | |
| export ENVNAME=ue-gcc-11.4.0 | |
| export ENVDIR=$PWD/envs/${ENVNAME} | |
| ls -l ${ENVDIR}/install/modulefiles/Core | |
| module use ${ENVDIR}/install/modulefiles/Core | |
| module load stack-gcc/11.4.0 | |
| module load stack-openmpi/5.0.1 | |
| module load stack-python/3.10.13 | |
| module available | |
| module load jedi-ufs-env | |
| module load ewok-env | |
| module load soca-env | |
| module list |