Version updates for spack-stack-1.6.0: [email protected], [email protected]…

….1, [email protected], [email protected] (#897)

* Update configs/common/modules_* for [email protected]
* Update fms versions in unified-dev and skylab-dev templates to just release-jcsda and 2023.04
* Update submodule pointer for spack
* Update configs/common/packages: [email protected], [email protected], [email protected], [email protected], [email protected]
* Update configs/containers/specs/jedi-ci.yaml for version updates

---------

Co-authored-by: Alex Richert <[email protected]>
Co-authored-by: Alex Richert <[email protected]>

configs/common/modules_lmod.yaml

@@ -129,20 +129,15 @@ modules:
             'MADIS_ROOT': '{prefix}'
       mapl:
         suffixes:
-          ^[email protected]~debug snapshot=none: 'esmf-8.2.0'
-          ^[email protected]+debug snapshot=none: 'esmf-8.2.0-debug'
-          ^[email protected]~debug snapshot=b09: 'esmf-8.3.0b09'
-          ^[email protected]+debug snapshot=b09: 'esmf-8.3.0b09-debug'
-          ^[email protected]~debug snapshot=none: 'esmf-8.3.0'
-          ^[email protected]+debug snapshot=none: 'esmf-8.3.0-debug'
-          ^[email protected]~debug snapshot=none: 'esmf-8.4.0'
-          ^[email protected]+debug snapshot=none: 'esmf-8.4.0-debug'
-          ^[email protected]~debug snapshot=none: 'esmf-8.4.1'
-          ^[email protected]+debug snapshot=none: 'esmf-8.4.1-debug'
+          # Keeping this as a reminder how to do snapshots
+          #^[email protected]~debug snapshot=b09: 'esmf-8.3.0b09'
+          #^[email protected]+debug snapshot=b09: 'esmf-8.3.0b09-debug'
           ^[email protected]~debug snapshot=none: 'esmf-8.4.2'
           ^[email protected]+debug snapshot=none: 'esmf-8.4.2-debug'
           ^[email protected]~debug snapshot=none: 'esmf-8.5.0'
           ^[email protected]+debug snapshot=none: 'esmf-8.5.0-debug'
+          ^[email protected]~debug snapshot=none: 'esmf-8.6.0'
+          ^[email protected]+debug snapshot=none: 'esmf-8.6.0-debug'
       openmpi:
         environment:
           set:

configs/common/modules_tcl.yaml

@@ -131,20 +131,15 @@ modules:
             'MADIS_ROOT': '{prefix}'
       mapl:
         suffixes:
-          ^[email protected]~debug snapshot=none: 'esmf-8.2.0'
-          ^[email protected]+debug snapshot=none: 'esmf-8.2.0-debug'
-          ^[email protected]~debug snapshot=b09: 'esmf-8.3.0b09'
-          ^[email protected]+debug snapshot=b09: 'esmf-8.3.0b09-debug'
-          ^[email protected]~debug snapshot=none: 'esmf-8.3.0'
-          ^[email protected]+debug snapshot=none: 'esmf-8.3.0-debug'
-          ^[email protected]~debug snapshot=none: 'esmf-8.4.0'
-          ^[email protected]+debug snapshot=none: 'esmf-8.4.0-debug'
-          ^[email protected]~debug snapshot=none: 'esmf-8.4.1'
-          ^[email protected]+debug snapshot=none: 'esmf-8.4.1-debug'
+          # Keeping this as a reminder how to do snapshots
+          #^[email protected]~debug snapshot=b09: 'esmf-8.3.0b09'
+          #^[email protected]+debug snapshot=b09: 'esmf-8.3.0b09-debug'
           ^[email protected]~debug snapshot=none: 'esmf-8.4.2'
           ^[email protected]+debug snapshot=none: 'esmf-8.4.2-debug'
           ^[email protected]~debug snapshot=none: 'esmf-8.5.0'
           ^[email protected]+debug snapshot=none: 'esmf-8.5.0-debug'
+          ^[email protected]~debug snapshot=none: 'esmf-8.6.0'
+          ^[email protected]+debug snapshot=none: 'esmf-8.6.0-debug'
       openmpi:
         environment:
           set:

configs/common/packages.yaml

@@ -27,11 +27,8 @@
       variants: +python
     cairo:
       variants: +pic
-    # Newer versions of CDO require the C++-17 standard, which doesn't
-    # work with all compilers that are currently in use in spack-stack
-    # When making changes here, also check Hercules/Casper site configs
     cdo:
-      version: ['2.0.5']
+      version: ['2.2.0']
       variants: ~openmp
     cmake:
       version: ['3.23.1']
@@ -49,10 +46,10 @@
       version: ['5.11.4']
       variants: +ui
     eckit:
-      version: ['1.24.4']
+      version: ['1.24.5']
       variants: linalg=eigen,lapack compression=lz4,bzip2
     ecmwf-atlas:
-      version: ['0.35.0']
+      version: ['0.35.1']
       variants: +fckit +trans +tesselation +fftw
     ectrans:
       version: ['1.2.0']
@@ -80,9 +77,7 @@
     fiat:
       version: ['1.2.0']
     fms:
-      #version: ['2023.01']
-      #variants: precision=32,64 +quad_precision +gfs_phys +openmp +pic constants=GFS build_type=Release
-      version: ['2023.02.01']
+      version: ['2023.04']
       variants: precision=32,64 +quad_precision +gfs_phys +openmp +pic constants=GFS build_type=Release +deprecated_io
     fontconfig:
       variants: +pic
@@ -178,9 +173,8 @@
     netcdf-cxx4:
       version: ['4.3.1']
     netcdf-fortran:
-      version: ['4.6.0']
-    # ninja - when adding information here, also check Cheyenne
-    # and Discover site configs
+      version: ['4.6.1']
+    # ninja - when adding information here, also check Discover site config
     nlohmann-json:
       version: ['3.10.5']
     nlohmann-json-schema-validator:

configs/containers/specs/jedi-ci.yaml

@@ -1,14 +1,14 @@
-  ### spack-stack-1.5.1 / skylab-6.1.0 containers for fv3-jedi and mpas-jedi (but not for ufs-jedi)
+  ### spack-stack-1.6.0 / skylab-7.0.0 containers for fv3-jedi and mpas-jedi (but not for ufs-jedi)
   specs: [[email protected], [email protected], [email protected], [email protected],
     [email protected], [email protected], [email protected], [email protected], [email protected], [email protected], ecflow@5,
-    [email protected].4, [email protected].0 +fckit +trans +tesselation +fftw, [email protected], [email protected] +fftw,
+    [email protected].5, [email protected].1 +fckit +trans +tesselation +fftw, [email protected], [email protected] +fftw,
     [email protected], [email protected], fms@release-jcsda, [email protected], [email protected], [email protected],
     [email protected], [email protected], [email protected], [email protected], [email protected], [email protected],
     [email protected], [email protected], [email protected], [email protected],
-    [email protected].0, [email protected], [email protected],
+    [email protected].1, [email protected], [email protected],
     [email protected], [email protected], [email protected], [email protected],
     [email protected], [email protected], [email protected],
-    [email protected], py-pip, py-pyyaml@5.4.1, [email protected], [email protected], py-xarray@2022.3.0,
+    [email protected], py-pip, py-pyyaml@6.0, [email protected], [email protected], py-xarray@2023.7.0,
     [email protected], [email protected], [email protected], [email protected], [email protected], [email protected], [email protected],
     [email protected], [email protected], [email protected], shumlib@macos_clang_linux_intel_port,
     [email protected], [email protected]]
@@ -17,4 +17,3 @@
     # 2. Comment out for now until build problems are solved
     #    https://github.com/jcsda/spack-stack/issues/522
     #    [email protected]
-    # 3. Need to update [email protected] to 12.0.1!

configs/sites/casper/packages.yaml

@@ -17,9 +17,6 @@ packages:
       - cuda/12.2.1
 
 ### Modifications of common packages
-  # Version 2.0.5 doesn't compile on Casper with gcc
-  cdo:
-    version:: ['2.2.0']
 
 ### All other external packages listed alphabetically
   autoconf:

configs/sites/hercules/packages.yaml

@@ -22,12 +22,9 @@ packages:
       - mvapich2/2.3.7
 
 ### Modifications of common packages
-  # Version 2.0.5 doesn't compile on Hercules with gcc
-  cdo:
-    version:: ['2.2.0']
-  # Version 2.0.8 doesn't compile on Hercules
-  wgrib2:
-    version:: ['3.1.1']
+  # DH* TRY IF THIS IS STILL TRUE # Version 2.0.8 doesn't compile on Hercules
+  # DH* TRY IF THIS IS STILL TRUE wgrib2:
+  # DH* TRY IF THIS IS STILL TRUE   version:: ['3.1.1']
 
 ### All other external packages listed alphabetically
   autoconf:

configs/templates/skylab-dev/spack.yaml

@@ -18,12 +18,10 @@ spack:
 
       # Various fms tags (list all to avoid duplicate packages)
       - fms@release-jcsda
-      - [email protected]
-      - [email protected]
-      - [email protected]
+      - [email protected]
 
       # Various crtm tags (list all to avoid duplicate packages)
-      - [email protected]
+      - [email protected].1
       - [email protected]
 
   specs:

configs/templates/unified-dev/spack.yaml

@@ -28,12 +28,10 @@ spack:
 
       # Various fms tags (list all to avoid duplicate packages)
       - fms@release-jcsda
-      - [email protected]
-      - [email protected]
-      - [email protected]
+      - [email protected]
 
       # Various crtm tags (list all to avoid duplicate packages)
-      - [email protected]
+      - [email protected].1
       - [email protected]
 
       # MADIS for WCOSS2 decoders.