Merge pull request #482 from climbfuji/feature/update_from_spack_dev_…

…20241031

Update spack-stack-dev from spack develop as of 2024/10/31

.codecov.yml

@@ -5,7 +5,7 @@ coverage:
   status:
     project:
       default:
-        threshold: 0.2%
+        threshold: 2.0%
 
 ignore:
   - lib/spack/spack/test/.*

.devcontainer/devcontainer.json → .devcontainer/ubuntu20.04/devcontainer.json

@@ -1,4 +1,5 @@
 {
+  "name": "Ubuntu 20.04",
   "image": "ghcr.io/spack/ubuntu20.04-runner-amd64-gcc-11.4:2023.08.01",
   "postCreateCommand": "./.devcontainer/postCreateCommand.sh"
 }

.devcontainer/ubuntu22.04/devcontainer.json

@@ -0,0 +1,5 @@
+{
+  "name": "Ubuntu 22.04",
+  "image": "ghcr.io/spack/ubuntu-22.04:v2024-05-07",
+  "postCreateCommand": "./.devcontainer/postCreateCommand.sh"
+}

.github/dependabot.yml

@@ -5,13 +5,10 @@ updates:
     directory: "/"
     schedule:
       interval: "daily"
-  # Requirements to build documentation
+  # Requirements to run style checks and build documentation
   - package-ecosystem: "pip"
-    directory: "/lib/spack/docs"
-    schedule:
-      interval: "daily"
-  # Requirements to run style checks
-  - package-ecosystem: "pip"
-    directory: "/.github/workflows/style"
+    directories:
+     - "/.github/workflows/requirements/style/*"
+     - "/lib/spack/docs"
     schedule:
       interval: "daily"

.github/workflows/audit.yaml

@@ -28,8 +28,8 @@ jobs:
       run:
         shell: ${{ matrix.system.shell }}
     steps:
-    - uses: actions/checkout@44c2b7a8a4ea60a981eaca3cf939b5f4305c123b
-    - uses: actions/setup-python@82c7e631bb3cdc910f68e0081d67478d79c6982d
+    - uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683
+    - uses: actions/setup-python@0b93645e9fea7318ecaed2b359559ac225c90a2b
       with:
         python-version: ${{inputs.python_version}}
     - name: Install Python packages
@@ -40,30 +40,35 @@ jobs:
       run: |
         python -m pip install --upgrade pywin32
     - name: Package audits (with coverage)
+      env:
+          COVERAGE_FILE: coverage/.coverage-audits-${{ matrix.system.os }}
       if: ${{ inputs.with_coverage == 'true' && runner.os != 'Windows' }}
       run: |
           . share/spack/setup-env.sh
           coverage run $(which spack) audit packages
+          coverage run $(which spack) audit configs
           coverage run $(which spack) -d audit externals
           coverage combine
-          coverage xml
     - name: Package audits (without coverage)
       if: ${{ inputs.with_coverage == 'false' && runner.os != 'Windows' }}
       run: |
-          . share/spack/setup-env.sh          
+          . share/spack/setup-env.sh
           spack -d audit packages
+          spack -d audit configs
           spack -d audit externals
     - name: Package audits (without coverage)
       if: ${{ runner.os == 'Windows' }}
       run: |
-          . share/spack/setup-env.sh          
+          . share/spack/setup-env.sh
           spack -d audit packages
           ./share/spack/qa/validate_last_exit.ps1
+          spack -d audit configs
+          ./share/spack/qa/validate_last_exit.ps1
           spack -d audit externals
           ./share/spack/qa/validate_last_exit.ps1
-    - uses: codecov/codecov-action@5ecb98a3c6b747ed38dc09f787459979aebb39be
-      if: ${{ inputs.with_coverage == 'true' }}
+    - uses: actions/upload-artifact@b4b15b8c7c6ac21ea08fcf65892d2ee8f75cf882
+      if: ${{ inputs.with_coverage == 'true' && runner.os != 'Windows' }}
       with:
-        flags: unittests,audits
-        token: ${{ secrets.CODECOV_TOKEN }}
-        verbose: true
+        name: coverage-audits-${{ matrix.system.os }}
+        path: coverage
+        include-hidden-files: true

.github/workflows/bootstrap-test.sh → .github/workflows/bin/bootstrap-test.sh

@@ -1,7 +1,7 @@
 #!/bin/bash
 set -e
 source share/spack/setup-env.sh
-$PYTHON bin/spack bootstrap disable github-actions-v0.4
+$PYTHON bin/spack bootstrap disable github-actions-v0.5
 $PYTHON bin/spack bootstrap disable spack-install
 $PYTHON bin/spack $SPACK_FLAGS solve zlib
 tree $BOOTSTRAP/store

.github/workflows/bootstrap.yml

@@ -37,14 +37,14 @@ jobs:
               make patch unzip which xz python3 python3-devel tree \
               cmake bison
       - name: Checkout
-        uses: actions/checkout@44c2b7a8a4ea60a981eaca3cf939b5f4305c123b
+        uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683
         with:
           fetch-depth: 0
       - name: Bootstrap clingo
         run: |
           source share/spack/setup-env.sh
+          spack bootstrap disable github-actions-v0.6
           spack bootstrap disable github-actions-v0.5
-          spack bootstrap disable github-actions-v0.4
           spack external find cmake bison
           spack -d solve zlib
           tree ~/.spack/bootstrap/store/
@@ -60,20 +60,20 @@ jobs:
         run: |
           brew install cmake bison tree
       - name: Checkout
-        uses: actions/checkout@44c2b7a8a4ea60a981eaca3cf939b5f4305c123b
+        uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683
         with:
           fetch-depth: 0
-      - uses: actions/setup-python@82c7e631bb3cdc910f68e0081d67478d79c6982d
+      - uses: actions/setup-python@0b93645e9fea7318ecaed2b359559ac225c90a2b
         with:
           python-version: "3.12"
       - name: Bootstrap clingo
         run: |
           source share/spack/setup-env.sh
+          spack bootstrap disable github-actions-v0.6
           spack bootstrap disable github-actions-v0.5
-          spack bootstrap disable github-actions-v0.4
           spack external find --not-buildable cmake bison
           spack -d solve zlib
-          tree ~/.spack/bootstrap/store/
+          tree $HOME/.spack/bootstrap/store/
 
   gnupg-sources:
     runs-on: ${{ matrix.runner }}
@@ -83,24 +83,22 @@ jobs:
     steps:
       - name: Setup macOS
         if: ${{ matrix.runner != 'ubuntu-latest' }}
+        run: brew install tree gawk
+      - name: Remove system executables
         run: |
-          brew install tree
-          # Remove GnuPG since we want to bootstrap it
-          sudo rm -rf /usr/local/bin/gpg
-      - name: Setup Ubuntu
-        if: ${{ matrix.runner == 'ubuntu-latest' }}
-        run: |
-          sudo rm -rf $(which gpg) $(which gpg2) $(which patchelf)
+          while [ -n "$(command -v gpg gpg2 patchelf)" ]; do
+            sudo rm $(command -v gpg gpg2 patchelf)
+          done
       - name: Checkout
-        uses: actions/checkout@44c2b7a8a4ea60a981eaca3cf939b5f4305c123b
+        uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683
         with:
           fetch-depth: 0
       - name: Bootstrap GnuPG
         run: |
           source share/spack/setup-env.sh
           spack solve zlib
+          spack bootstrap disable github-actions-v0.6
           spack bootstrap disable github-actions-v0.5
-          spack bootstrap disable github-actions-v0.4
           spack -d gpg list
           tree ~/.spack/bootstrap/store/
 
@@ -112,35 +110,34 @@ jobs:
     steps:
       - name: Setup macOS
         if: ${{ matrix.runner != 'ubuntu-latest' }}
+        run: brew install tree
+      - name: Remove system executables
         run: |
-          brew install tree
-          # Remove GnuPG since we want to bootstrap it
-          sudo rm -rf /usr/local/bin/gpg
-      - name: Setup Ubuntu
-        if: ${{ matrix.runner == 'ubuntu-latest' }}
-        run: |
-          sudo rm -rf $(which gpg) $(which gpg2) $(which patchelf)
+          while [ -n "$(command -v gpg gpg2 patchelf)" ]; do
+            sudo rm $(command -v gpg gpg2 patchelf)
+          done
       - name: Checkout
-        uses: actions/checkout@44c2b7a8a4ea60a981eaca3cf939b5f4305c123b
+        uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683
         with:
           fetch-depth: 0
-      - uses: actions/setup-python@82c7e631bb3cdc910f68e0081d67478d79c6982d
+      - uses: actions/setup-python@0b93645e9fea7318ecaed2b359559ac225c90a2b
         with:
           python-version: |
             3.8
             3.9
             3.10
             3.11
             3.12
+            3.13
       - name: Set bootstrap sources
         run: |
           source share/spack/setup-env.sh
-          spack bootstrap disable github-actions-v0.4
+          spack bootstrap disable github-actions-v0.5
           spack bootstrap disable spack-install
       - name: Bootstrap clingo
         run: |
           set -e
-          for ver in '3.8' '3.9' '3.10' '3.11' '3.12' ; do
+          for ver in '3.8' '3.9' '3.10' '3.11' '3.12' '3.13'; do
             not_found=1
             ver_dir="$(find $RUNNER_TOOL_CACHE/Python -wholename "*/${ver}.*/*/bin" | grep . || true)"
             if [[ -d "$ver_dir" ]] ; then
@@ -150,7 +147,7 @@ jobs:
                 not_found=0
                 old_path="$PATH"
                 export PATH="$ver_dir:$PATH"
-                ./bin/spack-tmpconfig -b ./.github/workflows/bootstrap-test.sh
+                ./bin/spack-tmpconfig -b ./.github/workflows/bin/bootstrap-test.sh
                 export PATH="$old_path"
               fi
             fi
@@ -163,5 +160,45 @@ jobs:
         run: |
           source share/spack/setup-env.sh
           spack -d gpg list
-          tree ~/.spack/bootstrap/store/
+          tree $HOME/.spack/bootstrap/store/
+      - name: Bootstrap File
+        run: |
+          source share/spack/setup-env.sh
+          spack -d python share/spack/qa/bootstrap-file.py
+          tree $HOME/.spack/bootstrap/store/
 
+  windows:
+    runs-on: "windows-latest"
+    steps:
+      - name: Checkout
+        uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683
+        with:
+          fetch-depth: 0
+      - uses: actions/setup-python@0b93645e9fea7318ecaed2b359559ac225c90a2b
+        with:
+          python-version: "3.12"
+      - name: Setup Windows
+        run: |
+          Remove-Item -Path (Get-Command gpg).Path
+          Remove-Item -Path (Get-Command file).Path
+      - name: Bootstrap clingo
+        run: |
+          ./share/spack/setup-env.ps1
+          spack bootstrap disable github-actions-v0.6
+          spack bootstrap disable github-actions-v0.5
+          spack external find --not-buildable cmake bison
+          spack -d solve zlib
+          ./share/spack/qa/validate_last_exit.ps1
+          tree $env:userprofile/.spack/bootstrap/store/
+      - name: Bootstrap GnuPG
+        run: |
+          ./share/spack/setup-env.ps1
+          spack -d gpg list
+          ./share/spack/qa/validate_last_exit.ps1
+          tree $env:userprofile/.spack/bootstrap/store/
+      - name: Bootstrap File
+        run: |
+          ./share/spack/setup-env.ps1
+          spack -d python share/spack/qa/bootstrap-file.py
+          ./share/spack/qa/validate_last_exit.ps1
+          tree $env:userprofile/.spack/bootstrap/store/

.github/workflows/build-containers.yml

@@ -40,8 +40,7 @@ jobs:
         # 1: Platforms to build for
         # 2: Base image (e.g. ubuntu:22.04)
         dockerfile: [[amazon-linux, 'linux/amd64,linux/arm64', 'amazonlinux:2'],
-                     [centos7, 'linux/amd64,linux/arm64,linux/ppc64le', 'centos:7'],
-                     [centos-stream, 'linux/amd64,linux/arm64,linux/ppc64le', 'centos:stream'],
+                     [centos-stream9, 'linux/amd64,linux/arm64,linux/ppc64le', 'centos:stream9'],
                      [leap15, 'linux/amd64,linux/arm64,linux/ppc64le', 'opensuse/leap:15'],
                      [ubuntu-focal, 'linux/amd64,linux/arm64,linux/ppc64le', 'ubuntu:20.04'],
                      [ubuntu-jammy, 'linux/amd64,linux/arm64,linux/ppc64le', 'ubuntu:22.04'],
@@ -56,7 +55,7 @@ jobs:
     if: github.repository == 'spack/spack'
     steps:
       - name: Checkout
-        uses: actions/checkout@44c2b7a8a4ea60a981eaca3cf939b5f4305c123b
+        uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683
 
       - uses: docker/metadata-action@8e5442c4ef9f78752691e2d8f8d19755c6f78e81
         id: docker_meta
@@ -77,7 +76,7 @@ jobs:
         env:
           SPACK_YAML_OS: "${{ matrix.dockerfile[2] }}"
         run: |
-          .github/workflows/generate_spack_yaml_containerize.sh
+          .github/workflows/bin/generate_spack_yaml_containerize.sh
           . share/spack/setup-env.sh
           mkdir -p dockerfiles/${{ matrix.dockerfile[0] }}
           spack containerize --last-stage=bootstrap | tee dockerfiles/${{ matrix.dockerfile[0] }}/Dockerfile
@@ -88,33 +87,33 @@ jobs:
           fi
 
       - name: Upload Dockerfile
-        uses: actions/upload-artifact@65462800fd760344b1a7b4382951275a0abb4808
+        uses: actions/upload-artifact@b4b15b8c7c6ac21ea08fcf65892d2ee8f75cf882
         with:
           name: dockerfiles_${{ matrix.dockerfile[0] }}
           path: dockerfiles
 
       - name: Set up QEMU
-        uses: docker/setup-qemu-action@68827325e0b33c7199eb31dd4e31fbe9023e06e3
+        uses: docker/setup-qemu-action@49b3bc8e6bdd4a60e6116a5414239cba5943d3cf
 
       - name: Set up Docker Buildx
-        uses: docker/setup-buildx-action@d70bba72b1f3fd22344832f00baa16ece964efeb
+        uses: docker/setup-buildx-action@c47758b77c9736f4b2ef4073d4d51994fabfe349
 
       - name: Log in to GitHub Container Registry
-        uses: docker/login-action@e92390c5fb421da1463c202d546fed0ec5c39f20
+        uses: docker/login-action@9780b0c442fbb1117ed29e0efdff1e18412f7567
         with:
           registry: ghcr.io
           username: ${{ github.actor }}
           password: ${{ secrets.GITHUB_TOKEN }}
 
       - name: Log in to DockerHub
         if: github.event_name != 'pull_request'
-        uses: docker/login-action@e92390c5fb421da1463c202d546fed0ec5c39f20
+        uses: docker/login-action@9780b0c442fbb1117ed29e0efdff1e18412f7567
         with:
           username: ${{ secrets.DOCKERHUB_USERNAME }}
           password: ${{ secrets.DOCKERHUB_TOKEN }}
 
       - name: Build & Deploy ${{ matrix.dockerfile[0] }}
-        uses: docker/build-push-action@2cdde995de11925a030ce8070c3d77a52ffcf1c0
+        uses: docker/build-push-action@4f58ea79222b3b9dc2c8bbdd6debcef730109a75
         with:
           context: dockerfiles/${{ matrix.dockerfile[0] }}
           platforms: ${{ matrix.dockerfile[1] }}
@@ -127,7 +126,7 @@ jobs:
     needs: deploy-images
     steps:
       - name: Merge Artifacts
-        uses: actions/upload-artifact/merge@65462800fd760344b1a7b4382951275a0abb4808
+        uses: actions/upload-artifact/merge@b4b15b8c7c6ac21ea08fcf65892d2ee8f75cf882
         with:
           name: dockerfiles
           pattern: dockerfiles_*