The code is applied for Mechanobiology 2023 course project. The goal is to implement the analytical part of the deformation cytometry (DC). Together with Clarisse Jeanne Maylis Pierre, Antoine Edouard Chekireb-Pack, Nadim Daher, and Michel Chammas, we successfully constructed a processing pipeline for the DC data. We extracted and discussed changes in mechanical features of cell lines in response to ME480 protein expression (a presumably-cell-mechanics-related protein). Specifically, I was responsible for image stack preprocessing and segmentation.
For more context and details, please refer to the pdf report.
For the codes, please refer to RTDC compression or segmentation