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Update nekRSDoc

Update nekRSDoc #4

Workflow file for this run

.github/workflows/ci.yml at c6f0a69
name: CI
on:
# allows us to run workflows manually
workflow_dispatch:
push:
branches:
- master
env:
GITHUB_TOKEN: "${{ secrets.GITHUB_TOKEN }}"
NEKRS_HOME: "${{ github.workspace }}/.local/nekrs"
MPICH_FC: "gfortran"
NEKRS_EXAMPLES: "${{ github.workspace }}/.local/nekrs/examples"
ENABLE_CUDA: "0"
ENABLE_HIP: "0"
NEKRS_COMPILER_FLAGS: "-O2 -march=x86-64-v3"
OCCA_CXXFLAGS: "-O2"
NEKRS_OCCA_MODE_DEFAULT: "SERIAL"
NRSCONFIG_NOBUILD: "1"
RUNNER_ARCH: "X64"
defaults:
run:
shell: bash
jobs:
install:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v3
with:
clean: true
- name: APT dependencies
run: |
sudo apt -y update
sudo apt install -y mpich libmpich-dev
- name: nrsconfig and build
run: |
CC=mpicc CXX=mpic++ FC=mpif77 ./nrsconfig -DENABLE_CVODE=ON -DCMAKE_INSTALL_PREFIX=${{ env.NEKRS_HOME }}
cmake --build build --target install -j 2
- name: Upload install dir
uses: actions/upload-artifact@v2
with:
name: install-dir
retention-days: 2
path: ${{ env.NEKRS_HOME }}
if-no-files-found: error
ethier:
needs: install
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v3
with:
clean: true
- name: APT dependencies
run: |
sudo apt -y update
sudo apt install -y mpich libmpich-dev
- name: Download install dir
uses: actions/download-artifact@v2
with:
name: install-dir
path: ${{ env.NEKRS_HOME }}
- name: Set install dir permissions
run: chmod -R 755 ${{ env.NEKRS_HOME }}
- name: 'ethier default'
working-directory: ${{ env.NEKRS_EXAMPLES }}/ethier
run: |
NEKRS_CACHE_DIR=${{ env.NEKRS_EXAMPLES }}/ethier/custom-cache-dir ${{ env.NEKRS_HOME }}/bin/nrsmpi ethier 1 --cimode 1
- name: 'ethier subcycle'
working-directory: ${{ env.NEKRS_EXAMPLES }}/ethier
run: ${{ env.NEKRS_HOME }}/bin/nrsmpi ethier 2 --cimode 2
- name: 'ethier velocity and pressure projection'
working-directory: ${{ env.NEKRS_EXAMPLES }}/ethier
run: ${{ env.NEKRS_HOME }}/bin/nrsmpi ethier 2 --cimode 3
- name: 'ethier (block) velocity and pressure projection with subcycling'
working-directory: ${{ env.NEKRS_EXAMPLES }}/ethier
run: ${{ env.NEKRS_HOME }}/bin/nrsmpi ethier 2 --cimode 4
- name: 'ethier default + moving mesh'
working-directory: ${{ env.NEKRS_EXAMPLES }}/ethier
run: ${{ env.NEKRS_HOME }}/bin/nrsmpi mv_ethier 2 --cimode 5
- name: 'ethier subcycle + moving mesh + subcycling'
working-directory: ${{ env.NEKRS_EXAMPLES }}/ethier
run: ${{ env.NEKRS_HOME }}/bin/nrsmpi mv_ethier 2 --cimode 6
- name: 'ethier gmres bug'
working-directory: ${{ env.NEKRS_EXAMPLES }}/ethier
run: ${{ env.NEKRS_HOME }}/bin/nrsmpi ethier 2 --cimode 7
- name: 'ethier variable dt'
working-directory: ${{ env.NEKRS_EXAMPLES }}/ethier
run: ${{ env.NEKRS_HOME }}/bin/nrsmpi ethier 2 --cimode 8
- name: 'ethier no dealiasing and subcycling'
working-directory: ${{ env.NEKRS_EXAMPLES }}/ethier
run: ${{ env.NEKRS_HOME }}/bin/nrsmpi ethier 2 --cimode 9
- name: 'ethier no dealiasing'
working-directory: ${{ env.NEKRS_EXAMPLES }}/ethier
run: ${{ env.NEKRS_HOME }}/bin/nrsmpi ethier 2 --cimode 10
- name: 'ethier Chebyshev+Jacobi'
working-directory: ${{ env.NEKRS_EXAMPLES }}/ethier
run: ${{ env.NEKRS_HOME }}/bin/nrsmpi ethier 2 --cimode 11
- name: 'ethier skip solving temperature'
working-directory: ${{ env.NEKRS_EXAMPLES }}/ethier
run: ${{ env.NEKRS_HOME }}/bin/nrsmpi ethier 2 --cimode 12
- name: 'ethier solve single scalar only'
working-directory: ${{ env.NEKRS_EXAMPLES }}/ethier
run: ${{ env.NEKRS_HOME }}/bin/nrsmpi ethierScalar 2 --cimode 13
- name: 'ethier additive V-cycle'
working-directory: ${{ env.NEKRS_EXAMPLES }}/ethier
run: ${{ env.NEKRS_HOME }}/bin/nrsmpi ethier 2 --cimode 14
- name: 'ethier linAlg + point interp + surface integral'
working-directory: ${{ env.NEKRS_EXAMPLES }}/ethier
run: |
NEKRS_CACHE_DIR=${{ env.NEKRS_EXAMPLES }}/ethier/custom-cache-dir ${{ env.NEKRS_HOME }}/bin/nrsmpi ethier 1 --cimode 15
- name: 'ethier cvode, both scalars'
working-directory: ${{ env.NEKRS_EXAMPLES }}/ethier
run: |
NEKRS_CACHE_DIR=${{ env.NEKRS_EXAMPLES }}/ethier/custom-cache-dir ${{ env.NEKRS_HOME }}/bin/nrsmpi ethier 1 --cimode 16
- name: 'ethier mixed elliptic/cvode'
working-directory: ${{ env.NEKRS_EXAMPLES }}/ethier
run: |
NEKRS_CACHE_DIR=${{ env.NEKRS_EXAMPLES }}/ethier/custom-cache-dir ${{ env.NEKRS_HOME }}/bin/nrsmpi ethier 1 --cimode 17
- name: 'ethier cvode, both scalars, no dealiasing, hpfrt'
working-directory: ${{ env.NEKRS_EXAMPLES }}/ethier
run: |
NEKRS_CACHE_DIR=${{ env.NEKRS_EXAMPLES }}/ethier/custom-cache-dir ${{ env.NEKRS_HOME }}/bin/nrsmpi ethier 1 --cimode 18
lowMach:
needs: install
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v3
with:
clean: true
- name: APT dependencies
run: |
sudo apt -y update
sudo apt install -y mpich libmpich-dev
- name: Download install dir
uses: actions/download-artifact@v2
with:
name: install-dir
path: ${{ env.NEKRS_HOME }}
- name: Set install dir permissions
run: chmod -R 755 ${{ env.NEKRS_HOME }}
- name: 'lowMach default'
working-directory: ${{ env.NEKRS_EXAMPLES }}/lowMach
run: ${{ env.NEKRS_HOME }}/bin/nrsmpi lowMach 2 --cimode 1
- name: 'lowMach + CVODE'
working-directory: ${{ env.NEKRS_EXAMPLES }}/lowMach
run: ${{ env.NEKRS_HOME }}/bin/nrsmpi lowMach 2 --cimode 3
mv_cyl:
needs: install
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v3
with:
clean: true
- name: APT dependencies
run: |
sudo apt -y update
sudo apt install -y mpich libmpich-dev
- name: Download install dir
uses: actions/download-artifact@v2
with:
name: install-dir
path: ${{ env.NEKRS_HOME }}
- name: Set install dir permissions
run: chmod -R 755 ${{ env.NEKRS_HOME }}
- name: 'mv_cyl'
working-directory: ${{ env.NEKRS_EXAMPLES }}/mv_cyl
run: ${{ env.NEKRS_HOME }}/bin/nrsmpi mv_cyl 2 --cimode 1
- name: 'mv_cyl + subcycling'
working-directory: ${{ env.NEKRS_EXAMPLES }}/mv_cyl
run: ${{ env.NEKRS_HOME }}/bin/nrsmpi mv_cyl 2 --cimode 2
- name: 'mv_cyl + subcycling + elasticity solve + projection'
working-directory: ${{ env.NEKRS_EXAMPLES }}/mv_cyl
run: ${{ env.NEKRS_HOME }}/bin/nrsmpi mv_cyl 2 --cimode 3
- name: 'mv_cyl + unaligned SYM'
working-directory: ${{ env.NEKRS_EXAMPLES }}/mv_cyl
run: ${{ env.NEKRS_HOME }}/bin/nrsmpi mv_cyl 2 --cimode 5
- name: 'mv_cyl + unaligned SYM + mesh solver'
working-directory: ${{ env.NEKRS_EXAMPLES }}/mv_cyl
run: ${{ env.NEKRS_HOME }}/bin/nrsmpi mv_cyl 2 --cimode 6
- name: 'mv_cyl + CVODE'
working-directory: ${{ env.NEKRS_EXAMPLES }}/mv_cyl
run: ${{ env.NEKRS_HOME }}/bin/nrsmpi mv_cyl 2 --cimode 7
- name: 'mv_cyl + CVODE + unaligned SYM + mesh solver'
working-directory: ${{ env.NEKRS_EXAMPLES }}/mv_cyl
run: ${{ env.NEKRS_HOME }}/bin/nrsmpi mv_cyl 2 --cimode 8
- name: 'mv_cyl, derived bc'
working-directory: ${{ env.NEKRS_EXAMPLES }}/mv_cyl
run: ${{ env.NEKRS_HOME }}/bin/nrsmpi mv_cyl_derived_bc 2 --cimode 1
- name: 'mv_cyl + subcycling, derived bc'
working-directory: ${{ env.NEKRS_EXAMPLES }}/mv_cyl
run: ${{ env.NEKRS_HOME }}/bin/nrsmpi mv_cyl_derived_bc 2 --cimode 2
- name: 'mv_cyl + subcycling + elasticity solve, derived bc'
working-directory: ${{ env.NEKRS_EXAMPLES }}/mv_cyl
run: ${{ env.NEKRS_HOME }}/bin/nrsmpi mv_cyl_derived_bc 2 --cimode 3
- name: 'mv_cyl + unaligned SYM, derived bc'
working-directory: ${{ env.NEKRS_EXAMPLES }}/mv_cyl
run: ${{ env.NEKRS_HOME }}/bin/nrsmpi mv_cyl_derived_bc 2 --cimode 5
- name: 'mv_cyl + unaligned SYM + mesh solver, derived bc'
working-directory: ${{ env.NEKRS_EXAMPLES }}/mv_cyl
run: ${{ env.NEKRS_HOME }}/bin/nrsmpi mv_cyl_derived_bc 2 --cimode 6
conj_ht:
needs: install
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v3
with:
clean: true
- name: APT dependencies
run: |
sudo apt -y update
sudo apt install -y mpich libmpich-dev
- name: Download install dir
uses: actions/download-artifact@v2
with:
name: install-dir
path: ${{ env.NEKRS_HOME }}
- name: Set install dir permissions
run: chmod -R 755 ${{ env.NEKRS_HOME }}
- name: 'conj_ht'
working-directory: ${{ env.NEKRS_EXAMPLES }}/conj_ht
run: ${{ env.NEKRS_HOME }}/bin/nrsmpi conj_ht 2 --cimode 1
- name: 'conj_ht + subcycling'
working-directory: ${{ env.NEKRS_EXAMPLES }}/conj_ht
run: ${{ env.NEKRS_HOME }}/bin/nrsmpi conj_ht 2 --cimode 2
- name: 'conj_ht + CVODE'
working-directory: ${{ env.NEKRS_EXAMPLES }}/conj_ht
run: ${{ env.NEKRS_HOME }}/bin/nrsmpi conj_ht 2 --cimode 3
channelStress:
needs: install
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v3
with:
clean: true
- name: APT dependencies
run: |
sudo apt -y update
sudo apt install -y mpich libmpich-dev
- name: Download install dir
uses: actions/download-artifact@v2
with:
name: install-dir
path: ${{ env.NEKRS_HOME }}
- name: Set install dir permissions
run: chmod -R 755 ${{ env.NEKRS_HOME }}
- name: 'channelStress (no rotation)'
working-directory: ${{ env.NEKRS_EXAMPLES }}/channel
run: ${{ env.NEKRS_HOME }}/bin/nrsmpi channel 2 --cimode 1
- name: 'channelStress (45 degree rotation)'
working-directory: ${{ env.NEKRS_EXAMPLES }}/channel
run: ${{ env.NEKRS_HOME }}/bin/nrsmpi channel 2 --cimode 2
tractionBoundary:
needs: install
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v3
with:
clean: true
- name: APT dependencies
run: |
sudo apt -y update
sudo apt install -y mpich libmpich-dev
- name: Download install dir
uses: actions/download-artifact@v2
with:
name: install-dir
path: ${{ env.NEKRS_HOME }}
- name: Set install dir permissions
run: chmod -R 755 ${{ env.NEKRS_HOME }}
- name: 'traction channel (no rotation)'
working-directory: ${{ env.NEKRS_EXAMPLES }}/shlChannel
run: ${{ env.NEKRS_HOME }}/bin/nrsmpi channel 2 --cimode 1
- name: 'traction channel (45 degree rotation)'
working-directory: ${{ env.NEKRS_EXAMPLES }}/shlChannel
run: ${{ env.NEKRS_HOME }}/bin/nrsmpi channel 2 --cimode 2
eddyNekNek:
needs: install
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v3
with:
clean: true
- name: APT dependencies
run: |
sudo apt -y update
sudo apt install -y mpich libmpich-dev
- name: Download install dir
uses: actions/download-artifact@v2
with:
name: install-dir
path: ${{ env.NEKRS_HOME }}
- name: Set install dir permissions
run: chmod -R 755 ${{ env.NEKRS_HOME }}
- name: 'eddyNekNek'
working-directory: ${{ env.NEKRS_EXAMPLES }}/eddyNekNek
run: ${{ env.NEKRS_HOME }}/bin/nrsmpi eddyNekNek.sess 2 --cimode 1
- name: 'eddyNekNekMv'
working-directory: ${{ env.NEKRS_EXAMPLES }}/eddyNekNek
run: ${{ env.NEKRS_HOME }}/bin/nrsmpi eddyNekNekMv.sess 2 --cimode 2
- name: 'eddyNekNek, velocity:solver = none'
working-directory: ${{ env.NEKRS_EXAMPLES }}/eddyNekNek
run: ${{ env.NEKRS_HOME }}/bin/nrsmpi eddyNekNek.sess 2 --cimode 3
ktauChannel:
needs: install
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v3
with:
clean: true
- name: APT dependencies
run: |
sudo apt -y update
sudo apt install -y mpich libmpich-dev
- name: Download install dir
uses: actions/download-artifact@v2
with:
name: install-dir
path: ${{ env.NEKRS_HOME }}
- name: Set install dir permissions
run: chmod -R 755 ${{ env.NEKRS_HOME }}
- name: 'ktauChannel'
working-directory: ${{ env.NEKRS_EXAMPLES }}/ktauChannel
run: ${{ env.NEKRS_HOME }}/bin/nrsmpi channel 2 --cimode 1