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Merge pull request #114 from aylward/BumpITKv4.5rc2
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ENH: Bump setup.py and CI to use ITK v5.4 rc2
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thewtex authored Apr 17, 2024
2 parents 25ad01c + 77aa1f7 commit fc7ffdc
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134 changes: 7 additions & 127 deletions .github/workflows/build-test-package.yml
Original file line number Diff line number Diff line change
Expand Up @@ -2,135 +2,15 @@ name: Build, test, package

on: [push,pull_request]

env:
itk-git-tag: "v5.3.0"

jobs:
build-test-cxx:
runs-on: ${{ matrix.os }}
strategy:
max-parallel: 3
matrix:
os: [ubuntu-20.04, windows-2022, macos-11]
include:
- os: ubuntu-20.04
c-compiler: "gcc"
cxx-compiler: "g++"
cmake-build-type: "MinSizeRel"
- os: windows-2022
c-compiler: "cl.exe"
cxx-compiler: "cl.exe"
cmake-build-type: "Release"
- os: macos-11
c-compiler: "clang"
cxx-compiler: "clang++"
cmake-build-type: "MinSizeRel"

steps:
- uses: actions/checkout@v3

- name: Set up Python 3.8
uses: actions/setup-python@v2
with:
python-version: "3.8"

- name: Install build dependencies
run: |
python -m pip install --upgrade pip
python -m pip install ninja
- name: Get specific version of CMake, Ninja
uses: lukka/[email protected]

- name: Download ITK
run: |
cd ..
git clone https://github.com/InsightSoftwareConsortium/ITK.git
cd ITK
git checkout ${{ env.itk-git-tag }}
- name: Build ITK
if: matrix.os != 'windows-2022'
run: |
cd ..
mkdir ITK-b
cd ITK-b
cmake -DCMAKE_C_COMPILER:FILEPATH="${{ matrix.c-compiler }}" -DBUILD_SHARED_LIBS:BOOL=ON -DCMAKE_CXX_COMPILER="${{ matrix.cxx-compiler }}" -DCMAKE_BUILD_TYPE:STRING=${{ matrix.cmake-build-type }} -DBUILD_TESTING:BOOL=OFF -DModule_RLEImage:BOOL=ON -GNinja ../ITK
ninja
- name: Build ITK
if: matrix.os == 'windows-2022'
shell: cmd
run: |
cd ..
mkdir ITK-b
cd ITK-b
call "C:\Program Files\Microsoft Visual Studio\2022\Enterprise\VC\Auxiliary\Build\vcvars64.bat"
cmake -DCMAKE_C_COMPILER:FILEPATH="${{ matrix.c-compiler }}" -DBUILD_SHARED_LIBS:BOOL=ON -DCMAKE_CXX_COMPILER="${{ matrix.cxx-compiler }}" -DCMAKE_BUILD_TYPE:STRING=${{ matrix.cmake-build-type }} -DBUILD_TESTING:BOOL=OFF -DModule_RLEImage:BOOL=ON -GNinja ../ITK
ninja
- name: Fetch CTest driver script
run: |
curl -L https://raw.githubusercontent.com/InsightSoftwareConsortium/ITK/dashboard/itk_common.cmake -O
- name: Configure CTest script
shell: bash
run: |
operating_system="${{ matrix.os }}"
cat > dashboard.cmake << EOF
set(CTEST_SITE "GitHubActions")
file(TO_CMAKE_PATH "\$ENV{GITHUB_WORKSPACE}/.." CTEST_DASHBOARD_ROOT)
file(TO_CMAKE_PATH "\$ENV{GITHUB_WORKSPACE}/" CTEST_SOURCE_DIRECTORY)
file(TO_CMAKE_PATH "\$ENV{GITHUB_WORKSPACE}/../build" CTEST_BINARY_DIRECTORY)
set(dashboard_source_name "${GITHUB_REPOSITORY}")
if((ENV{GITHUB_REF_NAME} MATCHES "master" OR ENV{GITHUB_REF_NAME} MATCHES "main"))
set(branch "-master")
set(dashboard_model "Continuous")
else()
set(branch "-${GITHUB_REF}")
set(dashboard_model "Experimental")
endif()
set(CTEST_BUILD_NAME "${GITHUB_REPOSITORY}-${operating_system}-\${branch}")
set(CTEST_UPDATE_VERSION_ONLY 1)
set(CTEST_TEST_ARGS \${CTEST_TEST_ARGS} PARALLEL_LEVEL \${PARALLEL_LEVEL})
set(CTEST_BUILD_CONFIGURATION "Release")
set(CTEST_CMAKE_GENERATOR "Ninja")
set(CTEST_CUSTOM_WARNING_EXCEPTION
\${CTEST_CUSTOM_WARNING_EXCEPTION}
# macOS Azure VM Warning
"ld: warning: text-based stub file"
)
set(dashboard_no_clean 1)
set(ENV{CC} ${{ matrix.c-compiler }})
set(ENV{CXX} ${{ matrix.cxx-compiler }})
if(WIN32)
set(ENV{PATH} "\${CTEST_DASHBOARD_ROOT}/ITK-b/bin;\$ENV{PATH}")
endif()
set(dashboard_cache "
ITK_DIR:PATH=\${CTEST_DASHBOARD_ROOT}/ITK-b
Module_MorphologicalContourInterpolation_BUILD_EXAMPLES:BOOL=ON
BUILD_TESTING:BOOL=ON
")
string(TIMESTAMP build_date "%Y-%m-%d")
message("CDash Build Identifier: \${build_date} \${CTEST_BUILD_NAME}")
message("CTEST_SITE = \${CTEST_SITE}")
include(\${CTEST_SCRIPT_DIRECTORY}/itk_common.cmake)
EOF
cat dashboard.cmake
- name: Build and test
if: matrix.os != 'windows-2022'
run: |
ctest --output-on-failure -V -S dashboard.cmake
- name: Build and test
if: matrix.os == 'windows-2022'
shell: cmd
run: |
call "C:\Program Files\Microsoft Visual Studio\2022\Enterprise\VC\Auxiliary\Build\vcvars64.bat"
ctest --output-on-failure -V -S dashboard.cmake
cxx-build-workflow:
uses: InsightSoftwareConsortium/ITKRemoteModuleBuildTestPackageAction/.github/workflows/[email protected]
with:
itk-cmake-options: '-DModule_MorphologicalContourInterpolation_BUILD_EXAMPLES:BOOL=ON'

python-build-workflow:
uses: InsightSoftwareConsortium/ITKRemoteModuleBuildTestPackageAction/.github/workflows/build-test-package-python.yml@b114bdd01a16855f57df0a973e665e61ac83355d
uses: InsightSoftwareConsortium/ITKRemoteModuleBuildTestPackageAction/.github/workflows/[email protected]
with:
test-notebooks: false
secrets:
pypi_password: ${{ secrets.pypi_password }}
6 changes: 5 additions & 1 deletion CMakeLists.txt
Original file line number Diff line number Diff line change
@@ -1,5 +1,9 @@
cmake_minimum_required(VERSION 3.16.3)

if(POLICY CMP0135)
cmake_policy(SET CMP0135 NEW)
endif()

if(CMAKE_CXX_STANDARD EQUAL "11" )
message(FATAL_ERROR "CMAKE_CXX_STANDARD:STRING=11 is not supported in ITK version 5.3 and greater.")
endif()
Expand All @@ -21,7 +25,7 @@ endif()
project(MorphologicalContourInterpolation)

if(NOT ITK_SOURCE_DIR)
find_package(ITK 4.9 REQUIRED)
find_package(ITK REQUIRED)
list(APPEND CMAKE_MODULE_PATH ${ITK_CMAKE_DIR})
include(ITKModuleExternal)
if(WASI OR EMSCRIPTEN)
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1 change: 1 addition & 0 deletions itk-module.cmake
Original file line number Diff line number Diff line change
Expand Up @@ -3,6 +3,7 @@ of manually segmented anatomical contours.
Enabling testing requires RLEImage module to be enabled.")

itk_module(MorphologicalContourInterpolation
ENABLE_SHARED
DEPENDS
ITKBinaryMathematicalMorphology
ITKDistanceMap
Expand Down
2 changes: 1 addition & 1 deletion setup.py
Original file line number Diff line number Diff line change
Expand Up @@ -49,6 +49,6 @@
keywords='ITK InsightToolkit Segmentation Interpolation-methods',
url=r'https://github.com/KitwareMedical/ITKMorphologicalContourInterpolation',
install_requires=[
r'itk>=5.3.0'
r'itk>=5.4rc2'
]
)

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