update workflows

Koeng101 · Jan 1, 2024 · ab3bb10 · ab3bb10
1 parent bbd1bd0
commit ab3bb10
Showing 1 changed file with 12 additions and 0 deletions.
diff --git a/.github/workflows/test.yml b/.github/workflows/test.yml
@@ -41,6 +41,18 @@ jobs:
         mkdir -p $HOME/bin
         cp ./minimap2-2.26_x64-linux/minimap2 $HOME/bin
         echo "$HOME/bin" >> $GITHUB_PATH
+    - name: Install dependencies for samtools
+      run: |
+        sudo apt-get update
+        sudo apt-get install -y libncurses5-dev libbz2-dev liblzma-dev zlib1g-dev
+    - name: Download and install samtools
+      run: |
+        curl -L https://github.com/samtools/samtools/releases/download/1.13/samtools-1.13.tar.bz2 | tar -jxvf -
+        cd samtools-1.13
+        ./configure --prefix=$HOME/samtools
+        make
+        make install
+        echo "$HOME/samtools/bin" >> $GITHUB_PATH
     - name: Test external
       run: go test -v ./external/...
   openbsd-test: