parts.csv for synthesis

parts/make_csv.py

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+import os
+import yaml
+import csv
+import sys
+
+def process_yaml_files(directory):
+    data = []
+    for filename in os.listdir(directory):
+        if filename.endswith('.yaml'):
+            with open(os.path.join(directory, filename), 'r') as file:
+                yaml_data = yaml.safe_load(file)
+                for name, gene in yaml_data.items():
+                    sequence = gene['prefix'] + gene['sequence'].lower() + gene['suffix']
+                    data.append({
+                        'name': name,
+                        'vector': 'pOpen_v3',
+                        'type': 'dna',
+                        'sequence': sequence
+                    })
+    return data
+
+def print_csv(data):
+    writer = csv.DictWriter(sys.stdout, fieldnames=['name', 'vector', 'type', 'sequence'])
+    writer.writeheader()
+    for row in data:
+        writer.writerow(row)
+
+if __name__ == '__main__':
+    directory = './parts'
+    yaml_data = process_yaml_files(directory)
+    print_csv(yaml_data)