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Hi,
As we are planning to scale up our APD projects significantly and move to a HPC center, I have been playing around with the --remove_result_pickles options. I have not been able to get it to work yet. The compress_result_pcikles seems to work, but that is not really what I am after.
rm: cannot remove 'result_model_1_multimer_v3_pred_0.pkl': No such file or directory
rm: cannot remove 'result_model_4_multimer_v3_pred_0.pkl': No such file or directory
rm: cannot remove 'result_model_3_multimer_v3_pred_0.pkl': No such file or directory
rm: cannot remove 'result_model_2_multimer_v3_pred_0.pkl': No such file or directory
It does not state where it is trying to remove the files from, but considering it just created the .pkl files in a specified folder, I am assuming it is within the same folder, but it is failing for some reason.
So the files are present in the corresponding folder inside the pulldown folder.
Also, why is it only trying (and failing) to remove 4 .pkl files (model 5 is missing), why not all 5 since that is what is being produced?
How are you guys getting this feature to work?
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Hi,
As we are planning to scale up our APD projects significantly and move to a HPC center, I have been playing around with the --remove_result_pickles options. I have not been able to get it to work yet. The compress_result_pcikles seems to work, but that is not really what I am after.
So latest test run I used this combo:
and in the log I see this:
rm: cannot remove 'result_model_1_multimer_v3_pred_0.pkl': No such file or directory
rm: cannot remove 'result_model_4_multimer_v3_pred_0.pkl': No such file or directory
rm: cannot remove 'result_model_3_multimer_v3_pred_0.pkl': No such file or directory
rm: cannot remove 'result_model_2_multimer_v3_pred_0.pkl': No such file or directory
It does not state where it is trying to remove the files from, but considering it just created the .pkl files in a specified folder, I am assuming it is within the same folder, but it is failing for some reason.
So the files are present in the corresponding folder inside the pulldown folder.
-rw-rw-r--+ 1 rtk rtk 1.8G Jul 29 15:24 result_model_1_multimer_v3_pred_0.pkl
-rw-rw-r--+ 1 rtk rtk 1.8G Jul 29 15:32 result_model_2_multimer_v3_pred_0.pkl
-rw-rw-r--+ 1 rtk rtk 1.8G Jul 29 15:40 result_model_3_multimer_v3_pred_0.pkl
-rw-rw-r--+ 1 rtk rtk 1.8G Jul 29 15:48 result_model_4_multimer_v3_pred_0.pkl
-rw-rw-r--+ 1 rtk rtk 1.8G Jul 29 15:56 result_model_5_multimer_v3_pred_0.pk
Also, why is it only trying (and failing) to remove 4 .pkl files (model 5 is missing), why not all 5 since that is what is being produced?
How are you guys getting this feature to work?
Ruki
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