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  AlphaPulldown v2.0.0

  DimaMolod announced Nov 6, 2024 in Announcements

  

  

  

  

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  Unify input syntax

  jkosinski started Nov 7, 2024 in Ideas

  

  

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  Default options in the snakemake pipeline

  jkosinski started Oct 12, 2024 in General

  

  

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  PI score calculation failed

  jsquaredosquared asked Sep 1, 2024 in Q&A · Answered

  

  

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  Can I use AlphaPullDown for 5K proteins?

  Rohit-Satyam asked Oct 1, 2024 in Q&A · Unanswered

  

  

  

  

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  Help with interpreting PAE plots

  bug Something isn't working

  jsquaredosquared asked Aug 26, 2024 in Q&A · Answered

  

  

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  Meaning of binding_energy in result table

  jansteinkuehler asked Aug 28, 2024 in Q&A · Answered

  

  

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  create_individual_features.py issue

  KrFrandsen started Aug 13, 2024 in General

  

  

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  Remove result pickles

  bug Something isn't working

  rukibuki asked Jul 30, 2024 in Q&A · Unanswered

  

  

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  jax error when create_notebook.py is run

  BismahGhafoor asked Jul 16, 2024 in Q&A · Unanswered

  

  

  

  

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  output jupyter notebook is empty

  sheng19331 started Jul 10, 2024 in Ideas

  

  

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  Can user limit the number of models?

  quinquepeta asked Jun 18, 2024 in Q&A · Unanswered

  

  

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  run pulldown mode with multimeric bait protein

  rukibuki asked May 26, 2024 in Q&A · Answered

  

  

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  num_ensemble

  lcscs12345 asked May 9, 2024 in Q&A · Unanswered

  

  

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  local mmseq2

  rukibuki asked May 6, 2024 in Q&A · Unanswered

  

  

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  Make use of all generated pdb models for the summary csv file

  DimaMolod started May 2, 2024 in Ideas

  

  

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  predictions_with_good_interpae.csv

  bug Something isn't working question Further information is requested

  DimaMolod started Apr 30, 2024 in Ideas

  

  

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  Uniref30

  rukibuki started Apr 15, 2024 in General

  

  

  

  

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  error in generating feature2

  Resram started Aug 11, 2023 in General

  

  

  

  

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  RoseTTAFold all atoms Pulldown

  Qrouger started Mar 29, 2024 in Ideas

  

  

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  Using a homodimer as bait for Pulldowns?

  nazzo1 asked Dec 24, 2023 in Q&A · Closed · Answered

  

  

  

  

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  Addition of flag (-save-pae-json) resulting in output of seperate pae.json files linked to predicted structures

  MHvegholm started Jan 30, 2024 in Ideas

  

  

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  Dealing with disordered proteins

  B-Bajramovic started Aug 15, 2023 in Ideas

  

  

  

  

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  Role of --num_cycle and --num_predictions_per_model

  loggy01 asked Jan 30, 2024 in Q&A · Closed · Answered

  

  

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  Alphafold integrated to google colab and others.

  superantichrist started Aug 25, 2023 in Ideas · Closed

  

  

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