Updated CI/CD

KosinskiLab · Oct 26, 2023 · 8824f36 · 8824f36
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diff --git a/.github/workflows/python-app.yml b/.github/workflows/python-app.yml
@@ -48,6 +48,7 @@ jobs:
           python -mpip install Sphinx pydata-sphinx-theme sphinx_design numpydoc sphinx_copybutton
           cd doc
           make clean
+          python -mpip list
           make html
           mkdir -p ../public
           mv _build/html/* ../public/

diff --git a/colabseg/__init__.py b/colabseg/__init__.py
@@ -5,3 +5,6 @@
 
 # from tensorvoting_wrapper import *
 # from segmentation_gui import *
+
+from .new_gui_functions import ColabSegData
+from .image_io import ImageIO
diff --git a/doc/Makefile b/doc/Makefile
@@ -5,7 +5,6 @@
 # from the environment for the first two.
 SPHINXOPTS    ?=
 SPHINXBUILD   ?= sphinx-build
-# SPHINXBUILD   = python3.8 -m sphinx
 SOURCEDIR     = .
 BUILDDIR      = _build
 

diff --git a/doc/_build/doctrees/environment.pickle b/doc/_build/doctrees/environment.pickle
diff --git a/doc/_build/doctrees/reference/data_structures.doctree b/doc/_build/doctrees/reference/data_structures.doctree
diff --git a/doc/_build/doctrees/reference/gui_interactions.doctree b/doc/_build/doctrees/reference/gui_interactions.doctree
diff --git a/doc/_build/html/_sources/reference/data_structures.rst.txt b/doc/_build/html/_sources/reference/data_structures.rst.txt
@@ -9,12 +9,12 @@ ColabSegData
 .. autosummary::
    :toctree: api/
 
-   new_gui_functions.ColabSegData
+   ColabSegData
 
 ImageIO
 ~~~~~~~
 .. autosummary::
    :toctree: api/
 
-   image_io.ImageIO
+   ImageIO
 
diff --git a/doc/_build/html/_sources/reference/gui_interactions.rst.txt b/doc/_build/html/_sources/reference/gui_interactions.rst.txt
@@ -1,17 +1,20 @@
 GUI Interactions
 ================
 
+.. currentmodule:: colabseg
+
+
 Segmentation
 ~~~~~~~~~~~~
 .. autosummary::
    :toctree: api/
 
-   colabseg.segmentation_gui.JupyterFramework
-   colabseg.tensorvoting_wrapper.generate_tensor_voting_gui
+   segmentation_gui.JupyterFramework
+   tensorvoting_wrapper.generate_tensor_voting_gui
 
 Controls
 ~~~~~~~~
 .. autosummary::
    :toctree: api/
 
-   colabseg.py3dmol_controls.seg_visualization
+   py3dmol_controls.seg_visualization
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diff --git a/..._build/html/reference/api/colabseg.segmentation_gui.JupyterFramework.save_radii_file.html b/..._build/html/reference/api/colabseg.segmentation_gui.JupyterFramework.save_radii_file.html
diff --git a/..._build/html/reference/api/colabseg.segmentation_gui.JupyterFramework.save_radii_plot.html b/..._build/html/reference/api/colabseg.segmentation_gui.JupyterFramework.save_radii_plot.html
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diff --git a/doc/_build/html/reference/api/colabseg.tensorvoting_wrapper.generate_tensor_voting_gui.html b/doc/_build/html/reference/api/colabseg.tensorvoting_wrapper.generate_tensor_voting_gui.html
diff --git a/...olabseg.tensorvoting_wrapper.generate_tensor_voting_gui.reset_optimal_default_values.html b/...olabseg.tensorvoting_wrapper.generate_tensor_voting_gui.reset_optimal_default_values.html
diff --git a/...l/reference/api/colabseg.tensorvoting_wrapper.generate_tensor_voting_gui.run_tv_code.html b/...l/reference/api/colabseg.tensorvoting_wrapper.generate_tensor_voting_gui.run_tv_code.html
diff --git a/doc/_build/html/reference/data_structures.html b/doc/_build/html/reference/data_structures.html
diff --git a/doc/_build/html/reference/gui_interactions.html b/doc/_build/html/reference/gui_interactions.html
diff --git a/doc/_build/html/reference/helpers.html b/doc/_build/html/reference/helpers.html
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diff --git a/doc/_build/html/searchindex.js b/doc/_build/html/searchindex.js
diff --git a/doc/reference/data_structures.rst b/doc/reference/data_structures.rst
@@ -9,12 +9,12 @@ ColabSegData
 .. autosummary::
    :toctree: api/
 
-   new_gui_functions.ColabSegData
+   ColabSegData
 
 ImageIO
 ~~~~~~~
 .. autosummary::
    :toctree: api/
 
-   image_io.ImageIO
+   ImageIO