Restructured project directory. Fixed type error preventing discrete …

…bandpass filtering on GPU. Fixed padding issue when filtering. Updated docs Restructured project directory. Fixed type error preventing discrete bandpass filtering on GPU. Fixed padding issue when filtering. Updated docs Restructured project directory. Fixed type error preventing discrete bandpass filtering on GPU. Fixed padding issue when filtering. Updated docs
KosinskiLab · Aug 23, 2024 · 4d0e01f · 4d0e01f
1 parent 62acfa4
commit 4d0e01f
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Showing 79 changed files with 177 additions and 3,217 deletions.
diff --git a/.github/workflows/main.yml b/.github/workflows/main.yml
@@ -31,12 +31,9 @@ jobs:
 
       - name: Test with pytest
         run: |
-          pip install pytest pytest-cov
+          pip install pytest pytest-cov importlib-resources
           ulimit -n 4096
-          pytest -vvv \
-            --cov=tme \
-            --cov-report=xml \
-            --cov-report=html
+          pytest -vvv
 
   docs:
     runs-on: ubuntu-latest

diff --git a/.gitignore b/.gitignore
@@ -72,8 +72,8 @@ doc/reference/data_structures/api
 doc/reference/preprocessing/api
 doc/reference/template_matching/api
 tme/package.py
-tme/tests/test_packaging.py
 tme/scoring.py
+tests/test_packaging.py
 scripts/match_template_devel.py
 scripts/match_template_filters.py
 scripts/refine_matches.py

diff --git a/doc/quickstart/api/fitting.rst b/doc/quickstart/api/fitting.rst
diff --git a/doc/quickstart/api/index.rst b/doc/quickstart/api/index.rst
diff --git a/doc/quickstart/installation.rst b/doc/quickstart/installation.rst
@@ -50,7 +50,7 @@ This section provides instructions on how to install |project|. We recommend cre
 
          docker pull dquz/pytme:latest
 
-      .. note::
+      .. tip::
 
          Latest corresponds to the current version of the main branch. You can also use a release version by specifiying the corresponding tag.
 
@@ -204,7 +204,7 @@ If the tests pass without any errors, |project| has been successfully installed.
 
       pip uninstall pytme
       pip install -e .
-      python3 -m pytest tme/tests/
+      python3 -m pytest tests/
 
 
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