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KarolineH committed Oct 11, 2023
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<h1 class="title is-1 publication-title">4D Berry - a spatio-temporal data set of strawberry plants</h1>
<h1 class="title is-1 publication-title">4D Berry</h1>
<h3 class="title is-1 publication-title">a spatio-temporal data set of strawberry plants</h3>
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A spatio-temporal dataset of point clouds of strawberry plants, including class and instance annotations.
A dataset of 84 coloured point clouds of strawberry plants, 12 of which are annotated with class and instance labels.
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<h3 class="title is-3">The data set</h3>
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This data set contains point clouds of 6 strawberry plants, each captured 14 times over the span of 11 weeks (13/05/2022 - 29/07/2022). 3 plants are of Driscoll's Katrina variety and 3 of Driscoll's Zara variety. A total of 84 point clouds are provided with an average of ... points per scan. Of these, 12 are labelled with temporally consistent labels for each point in the clouds.
This data set contains point clouds of 6 strawberry plants, each captured 14 times over the span of 11 weeks (13/05/2022 - 29/07/2022).
3 plants are of Driscoll's Katrina variety and 3 of Driscoll's Zara variety. A total of 84 point clouds are provided with an average of ... points per scan.
Of these, 12 are labelled with temporally consistent labels for each point in the clouds.
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<h3 class="title is-3">Method</h3>
<h3 class="title is-3">Methodology</h3>
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The scans were recorded using the Shining 3D Einscan Pro 2x handheld scanner, equipped with the 'Color Pack' add-on. The scanner operates based on structured-light projections, so while the plants were regularly housed under polytunnels at the University of Lincoln Riseholme campus farm, the plants were carefully moved into a controlled scanning environment for each data collection. The scanning chamber was set up to provide low and diffuse indirect light, optimizing conditions for data capture. The scanner was calibrated before each use.
The scans were recorded using the <a href="https://www.einscan.com/handheld-3d-scanner/einscan-pro-2x-2020/">Shining 3D Einscan Pro 2x </a> handheld scanner,
equipped with the <a href="https://www.einscan.com/handheld-3d-scanner/color-pack/">'Color Pack'</a> 'Color Pack' add-on.
The scanner operates based on structured-light projections, so while the plants were regularly housed under polytunnels
at the University of Lincoln <a href="https://www.lincoln.ac.uk/liat/riseholmecampus/">Riseholme campus farm</a>, the plants were carefully
moved into a controlled scanning environment for each data collection. The scanning chamber was set up to provide low and diffuse indirect light,
optimizing conditions for data capture. The scanner was calibrated before each use.
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<h3 class="title is-3">Annotations</h3>
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Two labels are provided per point: one class label and one instance label to distinguish individual organ instances of the same class.
Please note that the instance labels are not temporally consistent and not ordered by emergence date of each organ.
Classes are:
1. leaf or leaflet
2. stem (incl. pertiole, peduncle, pedicel, and stolon)
3. berry
4. flower
5. crown
6. background (incl. soil, grow bags, neighbouring plants, and any other objects captured in the background)
7. other (any unidentifiable structure within the plant, which may include newly emerging shoots)
8. the scanning table
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<h3 class="title is-3">Data format and ressources</h3>
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We provide each scan as an .xyz text file with 8 columns per points (X,Y,Z,R,G,B,class,instance), providing the 3D coordinates, followed by RGB values, and the class and instance labels where available.
Files are named by their plant variety, id, and capture date in year-month-day format, e.g. katrina2_20220729.xyz
We recommend using <a href="https://www.danielgm.net/cc/">CloudCompare</a> to inspect the data.
Make sure to switch these two drop-down menus in the Properties window to see all three visualisations: original colour, classes, and instances
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We also provide sample code to open the files in Python, optionally using Open3D or numpy.
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