Dandage_and_Landry_2019

Source code for

Paralog dependency indirectly affects the robustness of human cells.

Rohan Dandage and Christian R Landry Institute Of Biology Integrative Et Des Systemes, Universite Laval, Quebec, Canada. Corresponding author email: christian.landry{at}bio.ulaval.ca Mol Syst Biol (2019)15:e8871: https://doi.org/10.15252/msb.20198871

Requirements

1. python 3
2. Anaconda package distributor

Usage

Installing dependencies

Required python packages can be installed from the environment.yml file.

conda env create -f environment.yml

Installing the package

git clone https://github.com/rraadd88/human_paralogs.git;cd human_paralogs;pip install -e .

Contents

filename	description
functions.py	codes for the analysis
plots.py	codes for generating plots
figures.ipynb	codes for generating figures
global_vars.py	global variables of the analysis
cfg.yml	yaml file with file paths