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CBW IMPACTT workshop tutorials 2023
Robyn Wright edited this page Jul 6, 2023
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For the 2023 CBW-IMPACTT microbiome workshop, we are teaching several modules, that you can find links to below.
Before the workshop, you should have carried out the Intro to Unix tutorial.
- Microbiome analysis using QIIME2 with 16S data
- Microbial diversity metrics and data visualization with QIIME2 (Taught with Hena Ramay)
- Metagenomic taxonomic and functional annotation (with Kraken2, Phyloseq, MMSeqs2 and JarrVis
- Please feel free to post a question on the Microbiome Helper google group if you have any issues.
- General comments or inquires about Microbiome Helper can be sent to [email protected].
Useful Links
Main SOPs
Amplicon SOP v2 (virtual box workflow)
Amplicon SOP v2 (qiime2-2022.11)
Amplicon SOP v2 (qiime2-2024.5)
PacBio Amplicon SOP v2 (qiime2-2022.2)
Tutorials
- CBW 2024 Workshops
- CBW-IMPACTT-workshop-tutorials-2023
- Intro to Unix
- ICG workshop tutorials 2023
- IMPACTT workshop tutorials 2022
- PICRUSt2 (CBW 2021)
- Metagenomics (CBW 2021)
- Intro to GNU Parallel
- BIOC4010 16S Tutorial
- Metagenomics Tutorial (Humann2 based)
- Download From SRA
- Random Forest Tutorial in R
- Other Tutorials