R-CMD-check #173
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| # Workflow derived from https://github.com/r-lib/actions/tree/v2/examples | |
| # Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help | |
| # | |
| # NOTE: This workflow is overkill for most R packages and | |
| # check-standard.yaml is likely a better choice. | |
| # usethis::use_github_action("check-standard") will install it. | |
| on: | |
| push: | |
| branches: | |
| - main | |
| - l2d | |
| pull_request: | |
| branches: [main, master, l2d] | |
| schedule: | |
| - cron: '0 0 * * 2' | |
| workflow_dispatch: | |
| name: R-CMD-check | |
| jobs: | |
| R-CMD-check: | |
| runs-on: ${{ matrix.config.os }} | |
| name: ${{ matrix.config.os }} (${{ matrix.config.r }}) | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| config: | |
| - {os: macOS-latest, cache: '~/Library/Application Support/renv', r: 'release'} | |
| - {os: windows-latest, r: 'release'} | |
| # Use 3.6 to trigger usage of RTools35 | |
| ## MM: L2D fork of sandpaper requires R >= 4.0 | |
| # - {os: windows-latest, cache: '~\AppData\Local\renv', r: '3.6'} | |
| # use 4.1 to check with rtools40's older compiler | |
| # - {os: windows-latest, r: '4.1'} | |
| - {os: ubuntu-latest, cache: '~/.local/share/renv', r: 'devel', http-user-agent: 'release'} | |
| - {os: ubuntu-latest, cache: '~/.local/share/renv', r: 'release', cov: 'true'} | |
| - {os: ubuntu-latest, cache: '~/.local/share/renv', r: 'oldrel-1'} | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| R_KEEP_PKG_SOURCE: yes | |
| R_REMOTES_NO_ERRORS_FROM_WARNINGS: true | |
| RENV_PATHS_ROOT: ${{ matrix.config.cache }} | |
| steps: | |
| - name: Record Linux Version | |
| if: runner.os == 'Linux' | |
| run: | | |
| echo "OS_VERSION=`lsb_release -sr`" >> $GITHUB_ENV | |
| mkdir -p "${{ runner.temp }}/sandbox/" | |
| echo "RENV_PATHS_SANDBOX=${{ runner.temp }}/sandbox/" >> $GITHUB_ENV | |
| - name: "Windows: prevent autocrlf" | |
| if: runner.os == 'Windows' | |
| run: git config --global core.autocrlf false | |
| shell: bash | |
| - uses: actions/checkout@v3 | |
| - uses: r-lib/actions/setup-pandoc@v2 | |
| - name: "Set up Chrome" # for PDF rendering | |
| uses: browser-actions/[email protected] | |
| - name: "Windows: setup TMPDIR" | |
| if: runner.os == 'Windows' | |
| run: | | |
| git config --global core.autocrlf true # reset setting to prevent errors downstream | |
| echo "TMPDIR=${{ runner.temp }}" >> $GITHUB_ENV | |
| shell: bash | |
| - name: "Setup R" | |
| uses: r-lib/actions/setup-r@v2 | |
| with: | |
| r-version: ${{ matrix.config.r }} | |
| http-user-agent: ${{ matrix.config.http-user-agent }} | |
| use-public-rspm: true | |
| - name: "Setup dependencies" | |
| uses: r-lib/actions/setup-r-dependencies@v2 | |
| with: | |
| extra-packages: any::rcmdcheck | |
| needs: check | |
| - name: "Restore {renv} cache" | |
| if: runner.os != 'Windows' | |
| uses: actions/cache@v3 | |
| with: | |
| path: ${{ env.RENV_PATHS_ROOT }} | |
| key: ${{ runner.os }}-${{ env.OS_VERSION }}-renv-${{ runner.r }}-${{ hashFiles('.github/workflows/R-CMD-check.yaml') }} | |
| restore-keys: | | |
| ${{ runner.os }}-${{ env.OS_VERSION }}-renv-${{ runner.r }}- | |
| - name: "Prime {renv} Cache" | |
| if: runner.os != 'Windows' | |
| run: | | |
| renv::settings$snapshot.type("explicit") | |
| renv::init(bioconductor = TRUE) | |
| system('sudo rm -rf renv.lock renv .Rprofile') | |
| system('git clean -fd -e .github') | |
| system('git restore .') | |
| shell: Rscript {0} | |
| - name: "Session info" | |
| run: | | |
| options(width = 100) | |
| pkgs <- installed.packages()[, "Package"] | |
| sessioninfo::session_info(pkgs, include_base = TRUE) | |
| shell: Rscript {0} | |
| - name: "Check" | |
| uses: r-lib/actions/check-r-package@v2 | |
| if: runner.os != 'Windows' | |
| with: | |
| upload-snapshots: true | |
| - name: "Check" | |
| uses: r-lib/actions/check-r-package@v2 | |
| if: runner.os == 'Windows' | |
| env: | |
| RENV_PATHS_ROOT: ~ | |
| with: | |
| upload-snapshots: true |