Update R package on Windows - from GitHub.yml #453
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| name: Install via GitHub (Windows) | |
| on: | |
| push: | |
| branches: [ "main" ] | |
| pull_request: | |
| branches: [ "main" ] | |
| permissions: | |
| contents: read | |
| jobs: | |
| build: | |
| runs-on: windows-latest | |
| strategy: | |
| matrix: | |
| r-version: ['4.4.1'] | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Set up R ${{ matrix.r-version }} | |
| uses: r-lib/actions/setup-r@v2 | |
| with: | |
| r-version: ${{ matrix.r-version }} | |
| - name: Install Rtools | |
| run: | | |
| choco install rtools -y | |
| shell: cmd | |
| - name: Add Rtools to PATH | |
| run: | | |
| writeLines('PATH="${PATH};C:\\rtools40\\usr\\bin;C:\\rtools40\\mingw64\\bin"', con = "~/.Renviron") | |
| writeLines('BINPREF="C:/rtools40/mingw64/bin/"', con = "~/.Rprofile") | |
| shell: Rscript {0} | |
| - name: Install dependencies | |
| run: | | |
| install.packages(c("remotes", "rcmdcheck", "devtools"), repos = "https://cloud.r-project.org") | |
| if (!requireNamespace("BiocManager", quietly = TRUE)) { | |
| install.packages("BiocManager", repos = "https://cloud.r-project.org") | |
| } | |
| BiocManager::install(c("biomaRt", "AnnotationDbi")) | |
| remotes::install_deps(dependencies = TRUE, repos = "https://cloud.r-project.org") | |
| shell: Rscript {0} | |
| - name: Install package from GitHub | |
| env: | |
| GITHUB_PAT: ${{ secrets.SW_GITHUB_PAT }} | |
| run: | | |
| devtools::install_github("LewisResearchGroup/digestR") | |
| shell: Rscript {0} | |
| - name: Check build tools | |
| run: Rscript -e "pkgbuild::check_build_tools(debug = TRUE)" | |
| - name: Check | |
| run: | | |
| rcmdcheck::rcmdcheck(args = "--no-manual", error_on = "error", build_args = "--no-build-vignettes", check_dir = "check_dir") | |
| shell: Rscript {0} | |
| timeout-minutes: 10 |