A collection of packages and tools for electron microscopy data analysis supported by the National Center for Electron Microscopy facility of the Molecular Foundry.
Read the documentation: https://openncem.readthedocs.io/en/latest/.
The openNCEM collection comes with different components, described below.
- ncempy
- openNCEM's python package to provide various algorithms and routines to process or simulate images.
- tools
- The tools build leveraging the algorithms and routines provided in the libraries/packages. They are subordered by the different problems they address.
- ncem2png
- Extracts a PNG file from the data in a SER, DM3, or DM4 file. For 3D and 4D files, it tries to extract an image from the middle of the third and forth dimension.
This program is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.
You should have received a copy of the GNU General Public License along with this program. If not, see https://www.gnu.org/licenses/.