Scripts and HMM profiles

HMM profiles for CCMs

Scripts for looking for CCMs in MMETSP data

ALAT_GGAT.txt

@@ -0,0 +1,42 @@
+>XP_002289904.1|alanine_aminotransferase|Thalassiosira_pseudonana_CCMP1335
+MQYAVRGEVVIRADAMAAEGRKIIYTNIGNPHAVGQKPITYYRQVLSLCDLPAECGVDNTQVAAAFPSDV
+IERAIEMRDAIGPAGTGAYTNSQGIGKFRDDVAHFITARDEHVALPSNIFLSNGASAAIENVLTGLIGSN
+RDAIMIPIPQYPIYSAIISRLGARQVGYFLERRTAAVERDGLDIRALTLINPGNPTGQVLGREDLEIICT
+FCAKHNIVLLADEVYQRNIYDDKKEFVSAKKVAVETPGCENLQLISFHSTSKGLIGECGRRGGYMELHNI
+DPYVQTQLYKLASSGLCSGVDGQMMTSLMVRPPLPGEESHELFSRQEFEIFSSLKRRAVSLVRGLNDIDG
+MTCTPAEGAMYAFPRVELPPKALDAAAINDQTPDNLYALSLLEETGICVVPASGFGQKEGRIGFRTTFLP
+PEDELNQAVVEFKRHHEWFCEKYA
+>OEU21541.1|alanine_aminotransferase|Fragilariopsis_cylindrus_CCMP1102
+MEYAVRGTVVIAADRINDELKAEQSMGAESKYKFQKIIYTNIGNPQSVGQQPLTWPRQVLALIDLPDEEG
+INHPNIQNIFPSDAIARARTIKIGLGGNGSGAYSHSKGIKMFREDVCTFLQNRDGIDVPTDVENIFLSNG
+ASAAIFNLLTSLIADNKCGIMIPIPQYPIYSASVEQLGGQKVGYYLDEKNKWNLSIDELERSLKEALENG
+TNVVAFVLINPGNPTGAVLTKQTVQDVVKFCSKHNLVLLADEVYQENVYNEQDKFYSCKRAAYDCGLLET
+NSIELASFHSTSKGVFGECGRRGGYMELTGFDENIKNQLYKLASASLCSTVNGQCMTSLMCRGPSPDDVS
+YESHEKEKLDIFNSLKKRSKIVNDGLNSIDGFSCQPAQGAMYCFPSIDNMPMKAINEAAEQNITPDTLYA
+LSLLERTGICVVPASGFGQRPGRYGFRTTFLPSEDDMAYSVNAMKDHHKEFCQKYA
+>NP_005300.1|alanine_aminotransferase1|Homo_sapiens
+MASSTGDRSQAVRHGLRAKVLTLDGMNPRVRRVEYAVRGPIVQRALELEQELRQGVKKPFTEVIRANIGD
+AQAMGQRPITFLRQVLALCVNPDLLSSPNFPDDAKKRAERILQACGGHSLGAYSVSSGIQLIREDVARYI
+ERRDGGIPADPNNVFLSTGASDAIVTVLKLLVAGEGHTRTGVLIPIPQYPLYSATLAELGAVQVDYYLDE
+ERAWALDVAELHRALGQARDHCRPRALCVINPGNPTGQVQTRECIEAVIRFAFEERLFLLADEVYQDNVY
+AAGSQFHSFKKVLMEMGPPYAGQQELASFHSTSKGYMGECGFRGGYVEVVNMDAAVQQQMLKLMSVRLCP
+PVPGQALLDLVVSPPAPTDPSFAQFQAEKQAVLAELAAKAKLTEQVFNEAPGISCNPVQGAMYSFPRVQL
+PPRAVERAQELGLAPDMFFCLRLLEETGICVVPGSGFGQREGTYHFRMTILPPLEKLRLLLEKLSRFHAK
+FTLEYS
+>AAC62456.1|alanine_aminotransferase|Zea_mays
+MAASVTVENLNPKVLKCEYAVRGEIVIHAQRRQQQLQTQPGSLPFDEILYCNIGNPQSLGQQPVTFFREV
+LALCDHPCLLEKEETKSLFSADAISRAKQILATIPGRATGAYSHSQGIKGLRDAIAAGIMSRDGFPANAD
+DIFITDGASPGVHMMMQLLIRNEKDGILCPIPQYPLYSASIALHGGTLVPYYLNEKNGWGLEISDFKTRL
+EDVRSKGIDVRALVVINPGNPTGQVLAEDNQYDIVKFCKNEGLVLLADEVYQENIYVDNKKFNSFKKIVR
+SMGYGEDDLPLVSLQSVSKGYYGECGKRGGYMEITGFSAPVREQIYKIASVNLCSNITGQILASLVMNPP
+KAGDESYASYKAEKDGILESLARRAKALEDAFNKLEGFSCNKAEGAMYLFPQIHLPQKAIEAAKAAKKAP
+DAFYALRLLESTGIVVVPGSGFGQVPGTWHIRCTILPQEDKIPAVISRFRAFHEAFLAEYRD
+>XP_009315638.1|alanine_aminotransferase|Trypanosoma_grayi
+MSTSRKAIHINPRVVEAQYAVRGLIPMRADEIKNALATPEGKGKYPFSSLVYCNIGNPQALEQKPLTFNR
+QVMSLVDAPFLLDNAAIKAQYPADAVARAQEYLSHIGNRTGAYTDSAGYAFVREIVARHINERDHGAKPL
+MDASSIMLTDGASTGVRLLLQILIGDASDGVMIPIPQYPLYTAQIALLGGTPAMYYLDENKGWALNVADL
+ASAYDECVAQRKATPRVLVVINPGNPTGGVLERGVMEAVAKFCCDRGMVLMADEVYQENIYAEGKRFVSF
+REVVLGLPAPYNTDTVLASLHSTSKGIIGECGRRGGYFSLTNAPAALTEQVVKMSSINLCSNVNGQLMTA
+LMCAPPRAGDASYDAYWAEYNAIFGSLKKRALMLAKELNSIRGFACQPVEGAMYAFPTIQLPEKYAQHNA
+ELNAREGRKLAPDARWALELLESSGIVVVPGSGFGQQPNTLHFRTTILPPEAQMERMVKALRGFQEDVWA
+KYA

Bestrophin.txt

@@ -0,0 +1,54 @@
+>gi|224000585|ref|XP_002289965.1|T.pse|bestrophin1_TPS
+MGPPIDPSVPVTDQVGEGSRKYRRTVYTHDDWVRHRSPDRFGNNLSTLFNSGIYKQVANEVFATTAVATF
+VFLWNMIAGGYTDLAGVQHGPIIDSPLAQMVGLPMTAFTILTPSLGLLLVFRTNTSYGRWDEARKMWGLN
+INHTRDLNRMATAWYGNEGNMDSVAFMGGDIPYSQPIDPVQRAYDLGQVSLFTWAFVRSMKRHLSPPEED
+EEDFKAELRARLTPEQAENIINAAHRPNRALFDLSVAIENLPMHFLRKNAINTNLSIFEDTLGGCERLLS
+SPVPLFYSRHTARFLSTWLLLLPFGLYEQFKDSWNHIAMIPATAFISVCLFGIEELATQLEEPFTILPMQ
+GFCDKIGGWCDEIVSWAGQGQQEYTEENAMSNEQEMTYWR
+>gi|223999673|ref|XP_002289509.1|T.pse|bestrophin2_TPS
+MPSFTSLSTLLLLALSSPQISAFAPLSSTSTPINVAPSTTTSTTNLQMGPPKTDIVLSETYGEGSRKYRR
+TVYTHNEWVKHRSSDRFAKNLFSMVNSGVYKSLAKEVFATTAVASAIVAWNGIAGGYTDFNGVEHGAIMS
+FLPQLVLPLTPFTLLSPSLGLLLVFRTNSSYGRWDEARKMWGLNINHTRDLNRMATAWYGHDNQIIDPAK
+RAEDLRQVSLYTWAFVRSMKRHLSPPSEDEEAFVEELYARMAPEQAEAIISAAHRPNRALYDLSVVIDKL
+PMHFMRKNEINKNLSIFEDTLGGCERLLSSPVPLFYTRHTARFLSTWLLLLPLAMYQPFSGSWNHVAMIP
+ATALTSVFLFGIDELSTQLEEPFTILPMQGFCDKIGGWCDEIVSWRGQGLDKEEQQYY
+>gi|WP_077172616.1|bestrophin|Pseudomonas_psychrotolerans
+MITRPQNPSLRELLFTVRGSIVQAIWPKLLYVVLLSLAVTLSHDVFLRFDFGLTTTPLTLWGLTLAIFLG
+FRNTTAYQRFWEARGLWGELLIAGRNLARQVETLVPGLTAPERRQLLTPLLAFGYALRDHLRREAPSADL
+QRVLVGEDALLAAPHRPSALIRRLGTRLVARAREEGLGDPLIANLDHQLDRLTAVLSGCERIRQTPIPYP
+YILMLHRVVHVYCFLLPFCLVDSLGWFTPLAVLVLAYTFFGLDALGDQIADPFGTQPNHLPLDALSRGLE
+IAVLDLLGEPTPEPIRAEAGLLR
+>gi|NP_004174.1|bestrophin-1_isoform1|Homo_sapiens
+MTITYTSQVANARLGSFSRLLLCWRGSIYKLLYGEFLIFLLCYYIIRFIYRLALTEEQQLMFEKLTLYCD
+SYIQLIPISFVLGFYVTLVVTRWWNQYENLPWPDRLMSLVSGFVEGKDEQGRLLRRTLIRYANLGNVLIL
+RSVSTAVYKRFPSAQHLVQAGFMTPAEHKQLEKLSLPHNMFWVPWVWFANLSMKAWLGGRIRDPILLQSL
+LNEMNTLRTQCGHLYAYDWISIPLVYTQVVTVAVYSFFLTCLVGRQFLNPAKAYPGHELDLVVPVFTFLQ
+FFFYVGWLKVAEQLINPFGEDDDDFETNWIVDRNLQVSLLAVDEMHQDLPRMEPDMYWNKPEPQPPYTAA
+SAQFRRASFMGSTFNISLNKEEMEFQPNQEDEEDAHAGIIGRFLGLQSHDHHPPRANSRTKLLWPKRESL
+LHEGLPKNHKAAKQNVRGQEDNKAWKLKAVDAFKSAPLYQRPGYYSAPQTPLSPTPMFFPLEPSAPSKLH
+SVTGIDTKDKSLKTVSSGAKKSFELLSESDGALMEHPEVSQVRRKTVEFNLTDMPEIPENHLKEPLEQSP
+TNIHTTLKDHMDPYWALENRDEAHS
+>gi|AAR99655.1|bestrophin2|Homo_sapiens
+MTVTYTARVANARFGGFSQLLLLWRGSIYKLLWRELLCFLGFYMALSAAYRFVLTEGQKRYFEKLVIYCD
+QYASLIPVSFVLGFYVTLVVNRWWSQYLCMPLPDALMCVVAGTVHGRDDRGRLYRRTLMRYAGLSAVLIL
+RSVSTAVFKRFPTIDHVVEAGFMTREERKKFENLNSSYNKYWVPCVWFSNLAAQARREGRIRDNSALKLL
+LEELNVFRGKCGMLFHYDWISVPLVYTQVVTIALYSYFLACLIGRQFLDPAQGYKDHDLDLCVPIFTLLQ
+FFFYAGWLKVAEQLINPFGEDDDDFETNFLIDRNFQVSMLAVDEMYDDLAVLEKDLYWDAAEARAPYTAA
+TVFQLRQPSFQGSTFDITLAKEDMQFQRLDGLDGPMGGAPGDFLQRLLPAGAGMVAGGPLGRRLSFLLRK
+NSCVSEASTGASCSCAVVPEGAAPECSCGDPLLDPGLPEPEAPPPAGPEPLTLIPGPVEPFSIVTMPGPR
+GPAPPWLPSPIGEEEENLA
+>gi|NP_988974.1|bestrophin-2|Xenopus_tropicalis
+MTVTYTARVANARFGGFYKLLLLWRGSIYKLLYKEFLAFFLMYLALSIIYRFFLNEEQKLYFDKVAIYCN
+NYANLIPVSFVLGFYVNLVVNRWWNQYLSLPFPDRVMCAISGTVHGSDETGRLYRRTLMRYCSLSGLLIL
+RSVSTAAFKRFPTIDHVVEAGFMTRLERKKFENLQSSYNKYWVPCVWFCNLASQARSEGRIRDDHSFKML
+MEELNTFRGNCGMLFHYDWISVPLVYTQVVTIAVYSFFLTCLIGRQFLDPARGYPGHELDLYVPVFTLLQ
+FFFYAGWLKVAEQLINPFGEDDDDFEINFLIDRNFQVSMLAVDEMYSDVPPMEKDRYWNHSDPRPPYTAA
+TLFQKHMPSFQGSTFNMAIPKEDMQFQPLSDIEEMNEDTLTHPPPLLSRFLPGVGPSPLSSSAALASHFA
+APGSRLTLLRRSTSSFSSSSEFQCQEPVQDPPYSLVDSLGPGLNVQEGHTEELCNMGSQASLFLPPKTMD
+GGENVQPVEEGEDAASLVAT
+>gi|WP_068888990.1|bestrophin|Acinetobacter_celticus
+MIVRDQPNIFKVLFSWRGTILPKILPPLGVVMLISAIIGVLSYIGYFKFPELPFVGFTVIGVVLSIFLGF
+KNSACYERWWDARKLWGILIANSRHFDRDCRMLSQGRRERVIQHVIVFANVLRDRLRHQTANPTELVKTS
+GMSQQALTQLYQQANAPQYTLSLIQWELMQALKDGEISDIIYTQMNDHVMDLSMVQTGCDRIATTPLPFA
+YSVLLNRTVYFFCLILPFSLGSTLGIFTPLLVGVLAYTFLGLDALSSELEEPFGTQSNDLPLDSMVRTIE
+IELLGTLGKPTPPPIQAQDNNLL

CA_alpha.txt

@@ -0,0 +1,76 @@
+>jgi|Emihu1|456048|estExtDG_Genemark1.C_1660056|CA2_alpha_EHUX
+MSPNKHSWRYARPGPNHVADEWVQRETWGASFPTCINGIEQSPINIVTGEAIPMKSLPEISTDIDAAPHY
+VSNTGSGFQLFETTPTESMIANGTFIDTIEGSSKGESWVGGQKFLFYQMHWHTPSENTIDGRSFPLEAHF
+VHQLDDPMLVGTLHRLAVISLLYEPGPCNAFLDQFWEEFPMVPGFRQHFADGVNDFERLADEVINIDEGE
+GYFYWHGSLTTPPCTEGVGWYMLKHRETVSDRQIDALRYALAVS
+>XP_005764209.1 carbonic anhydrase [Emiliania huxleyi CCMP1516]
+MGCTQSKHDASEDASNGTMLQAVLGHLGQLDGDAKLDHTTMSIVYDIFKDMDKDSDGTVDKSEFEKFLST
+HPAAKTLWEGEGKASMSRSLKDAIADERLSFYELVAAFAPEAPHHAGDASGIGGLESLISDAAWGYRGYN
+GPENWALLSPKNKLAATGKEQCPVDILPSTCVPCPAVDGDASLAYGVGPGTILNNGHTIQVNWKGGSMSV
+GGTTFEAAQFHFHTASETTIRGMQYPLEMHVVHVTPGANERVSEPMRIAVLAVLFETRTDVEEVFLSQFF
+DQLPSHVAHDQDDAETLTRPVDLSSISLDGGYYRLRGSLTTPPCTEGLEWSVLASPLPILPAQLETFRKA
+LGKTVRNFRPTQPLNGRSITWVCACQA
+>jgi|Thaps3|22391|estExt_fgenesh1_pg.C_chr_40655|CA1_alpha_TPS
+MILLQPMTKRMSTSSHLVILVVLLRLQSSNSRSWLDCINTSKLENDGMPRVGKRHNATTSSLSSDAAITI
+AQMSGNIGTSTTSEDTEIVIHGATTTLFEEVDPFRVTDSPSTVPSYSSSPPTLSPSASPTITPLPTTEKP
+TRLPTLPPTFQTGKNEPLNPKPGYFNYDMNSDYGPHRWKRVDVEDDFFHTFDLKAEDTNNCGSGDHQSPI
+DVCTKPRGNCKETHEMRPKSGDYKMDGELITKQILPSKLRLVMAPRTGDEPDPPQVDFSSNGRGIIDMTN
+IDFKFPSEHTVCGSKFDGEMQYYMYHPGRERFVAVSFFLEASPTNPTNEHLQEVIDAFRTVFIKDKSLCA
+EKQRLENYAQGFVSPANRKLHGEENKTLDSIEDDGELWNTTTIESNEDREYQRRLALKWHPFHPDIQKTI
+HFWGYHGSFTEPPCTDDIVDWKIMDVPTPISTKQLAQLKQLLFNHVDKNCERTSVHNSDGSVARPTQETS
+KYYKCTRDDYVSDEERGVCGDLGCINPFGEGLNPYYPPIVDVTGPPTRAPST
+>jgi|Thaps3|262006|thaps1_ua_kg.chr_4000016|CA2_alpha_TPS
+SEHRLCGKQYDAEMQLFHLHNEGNLEALAILIDADDGTSENPHFQKLLDFFQKKFNADKSMSRDWVWDPL
+EPGYILRSIHFWAYSGSTTEPPCFEGVNWRIIDVPMKISPGQYQQLQRLMFDHSNARPVQP
+>jgi|Thaps3|22257|estExt_fgenesh1_pg.C_chr_40398|CA11_alpha_TPS
+MTRVSNIDSMMDGFGKLSRRAKILYLSSLAVSLAMVVFGACVLTLDYTTRTTSKVENSIGGVVNADDSDE
+AKIQIETQTPTLSPSSSPIYTEKLSLVSSPAPSTSNLRATSAPTNSPVDIGTLQPVTRKPVQPKPTPRPA
+SPKPSSPPSTRYPSISPSQHPTNSPSLSPVTPSPPPTLTQSILPSITNMPSLESLFQSHEVPKDPKPTYF
+NYNGNSDYGPRSWENVTLLNSTENYWHEFGFNDNQCGVGAQSPIDVCTTPMRHCQEHHEFRSKLRVLMHR
+REGDEPDPPHVDFAGVGAKSLDLLNIDIKIPSEHTVCGRRYDGEMQYYFYHPVKGSLIVIAWLFDAQNEF
+ASNEHLQLVIDEFQALYDDTEGACLVNMTLNETGVTAPPHQRLSSRSDRELEKENHGCSGSNLNGPAPSN
+AEYPIQQP
+>jgi|Phatr2|35370|fgenesh1_pg.C_chr_7000291|CA1_PTRI
+MRLIAISLCCLMPCTVRCRSWRNIEPLHGWNENDTSGTIWRMEFNPLFTSAPTSMPTTATPSDIPSSRPS
+SFPSAPPSASPSVAPSPSPSTAPSESDPYRPNDPPKNPEQWYFNYDTSANALYGPGHAGIIQQQNNQFNV
+GYKNNRWGSVGNPPNNYWTEFMDNGFGPWRGILANRNPTRNMCDRVGMQSPIDLRPSGAVCDEHHEVRSR
+RGDFQIFEDEVTKEIQPNKLRLRYKRRPCRNLNELACQEPDPPNADFPNNWGGYADVTHIDFKVPGEHLI
+RGEKFDGEMQIFHIHRGRRRMVVQSVTIRATSTGFNSYFQEAIDVFRAVYDINIARCSALRRKERRLVSN
+AHIILGKNMTSKFHDYSSWGDFSTGLEDVELESKRSLRKSNWDPYHELLIPSIHFYRYDGSLTEPPCGEF
+VSWFVSDTPMRISLSQLEEVKTILFKNVDENCQPTSVQFGHSVARPIQETAGRPVWQCTPREFGPDP*
+>jgi|Phatr2|44526|estExt_fgenesh1_pg.C_chr_40337|CA2_PTRI
+MVGLPSVLLCTLIAFTTAQTGRDLDRFNYRGTDGTDYGPEDWDQVSCTDTETCLGWPDGFETARGWDLGE
+NHCRWCPLGTRQCGIHHQSPIDLQRNRAVPGDPEEKECIDVHWMAYYDSTCDWENLKALNAFSIERHALK
+VNQPIEQLASGDYRLACRNASGRRFGRIDFSKGFSEWWLMSHMDIHVPSEHTQEGKRYDGEIHLYHFYSI
+PGSQSSTNNEMASVTIFLEAYDDVPDYPMLNRLICQWRQVEDKTREECGLPSVETEYPGCFYYQRGHTID
+GFNTIALTQDGTQRNLRQKSRNLRPKSMSVHDLILYNYAQSQTNSSYTPKRLLHSEEDHAEADPNFDWEK
+FVTRQDGNANITQGNRQLLNYDHVGPWFNYFPMLGVRTEYYYRYSGTQTVPPCYGRFFEGNNRRQTNHWR
+VLKDPIRVTQRQVDEMHRLLKERIASVDDPLASCEPDTAAKVDENDPTKISVARPVMETRSTHYKVFCEC
+EDWRSKFPEDVEWCKKGLQDRLFNHPYNFETDGF*
+>jgi|Phatr2|55029|estExt_Phatr1_ua_kg.C_chr_210026|CA3_PTRI
+MSLSGIVCSRAKWFLLSIALPTLGLGLNKTAFSYNKKDEYSPDNWYRLDIAGNVCRGPRNSPIALESTPC
+DAYEGYGLYSGTCTLNDLDFQLTELGVKIKYPKDGSCDINTLTVPGVSGNFRLLEVTIHGGSEHSIDGNF
+SGAEIQLVHEKINSQEGHLAVLAILVEPEGPKDNLFFGTLLDEWRAVRADSTASCAKAGYDVPTLYWLAS
+GTPVNTRHSYVRSYFTSPRFNAYSLLPTNTSFYRYYGGLTTPPCSEIVWWSVADTVMRISTGQYAELMTM
+ITTGYVNVTDEAGCEPWSVASPSGSTSRPLQARNGRPVDRICPV*
+>jgi|Phatr2|54251|estExt_Phatr1_ua_kg.C_chr_40037|CA7_PTRI
+MRSFLLWSLVASFATAQEGSNLDRFNYRGTEGTDYGPEDWDQVSCSDTENCLGWPDAFEASRGWSLKDNF
+CRWCPAGSSSCGTHHQSPIDLQRNRAVPGDPDENECIDVHWMAYYDSTCTWDTLKELNAFSVERHALKVV
+QPITETTSGEWEIACRDDSGKRFGRIDFSKGFSQWWFLSHMDFHVPSEHTQEGKRYDGELHMYHFYSVTG
+AEAGIDNEMASVAFFLEAYDDIPDYPMLNRLICQWREAEEKTREECGLPSILTEYPGCFFYNRGHTDSAV
+TTQSISNGQRKLRTTSRNLRPKVKSVHDIILQNHEQMQSNATFKPHKLILSEDDHAEADPDFDWGAFVAE
+QVAKSTSSQEHRELMNYDHVGPWFNYFPLVDVRTEYYYRYSGSQTVPPCYGRHIGGSRKQTNHWRFMKDP
+LRVTQRQIDEMHRLLKERIAPLDDPLASCQPDTAAKVNEDDPTKISVARPLMETRDTHYKVFCECIDWPS
+KWPEDRAWCEQGFMDRLYTHPYNFQTDGF*
+>gbi|AQL05019.1|Alpha_carbonic_anhydrase_7|Zea_mays
+MHALVRPWDTLPVLLLSRLCMVLLDALRAGWLGSVDEDEEDFSYRRNAGNGPARWGLIRREWATCNVGLL
+QSPIGLSDTLAGLADRSGRLGRSYRPAAASLVNRGHSIMVRFNSNPGGVVIDGVAYRLRQMHWHAPSEHA
+INGRRYALELQMVHQSDTNRYAVVSQLYRISRRRPDRTIHRLERYIRRIARRKNHEELIDEEVDPRRPGT
+RSNRRPLQEANGRAITFYYTSPAHGRGANGD
+>gi|OMO73707.1|Alpha_carbonic_anhydrase|Corchorus_olitorius
+MKHQSKPIFVSAFLIIFAVLFLSHSASVSAQEVEDEREFDYLEKSGKGPKHWGDLKQEWAACKNGDLQSP
+IDMSSLRVKVIKKSGEMKKRYKPCHAVVKNRGHDISLQWLDNDAGSIKINGTEYFLQQAHWHSPSEHTIN
+GRRYALELHMVHQSKDPNLKNNLAVVGLLYKFGAPDSFISKLISNITSMNDHVQERYMGVIDPSAIKMGG
+KKYYRYMGSLTVPPCTEGVIWTMNKKVRTVSRDQVRALRIAVHDYAEANARPVQPLNRREVELYGPNPGD
+VSN
+

CA_beta.txt

@@ -0,0 +1,24 @@
+>jgi|Phatr2|45443|estExt_fgenesh1_pg.C_chr_70069|CA5_beta
+MKFATAATVTLLALSTVDALNVKKLFRFGKTSLPKDSSPKPAAKGGYDLDVSELFDGNNKFIADKLAGDP
+AYFDTLGTVHSPKYLYIGCVDARAPPNMIMGTEAGTMLTVRNIANMVVNNDLAVMSAIQFGINVLKIPNV
+ILCGHYECGGVRASVANVDHAPPLSIWLRNIRDVYRLHAKELDAIKDPEERHRRLVDLNVIEQCVNLFKT
+GVIQAKRIESYKDGGVAIPQVHPVVFDPKTGEVKKLKVDFDKYMAEINGIYDLYDLENAKVPM
+>jgi|Phatr2|51305|estExt_fgenesh1_kg.C_chr_10001|CA4_beta
+MKFLSASIALLACATSVEAFNANKAFRFGAKAMPEVSSESATSALSAGGAEKKSYDLDITEIFDGNKKFI
+ETKKAQDAAYFDTLGTVHSPKYLYIGCVDARAPPNMIMGTEAGTMLTVRNIANMVVNNDLAVMSAIQFGI
+NVLKIPHVIVCGHYECGGVRASVANVDHAPPLSIWLRNIRDVYRLHARELDAIKDPEDRHRRLVDLNVIE
+QCVNLYKTGVIQAKRIESYQEGAPAAIPRVHPIVFDPKTGAIRKLQVDFDKYMSELDAIYDLYELENAKI
+PA*
+>gi|ONM39907.1|BetaCA_4|Zea_mays
+MAVERLKTGFEQFKADVYDKKPELFEPLKAHQSPKYMVFACSDSRVCPSVTLGLHPGEAFAVRNIASMVP
+PYDKTKYAGVGSAIEYAVCALKVEVIVVIGHSRCGGIKALLSLEDGAPDKFHFVEEWVRVGAPAKSKVLA
+DHASAPFEDQCSILEKEAVNVSLENLKSYPFVKEGLEKGTLKLVGGHYDFVNGKFETWEP
+>gi|SIT99918.1|beta-carbonic_anhydrase|Mycobacterium_bovis_AF2122/97
+MTVTDDYLANNVDYASGFKGPLPMPPSKHIAIVACMDARLDVYRMLGIKEGEAHVIRNAGCVVTDDVIRS
+LAISQRLLGTREIILLHHTDCGMLTFTDDDFKRAIQDETGIRPTWSPESYPDAVEDVRQSLRRIEVNPFV
+TKHTSLRGFVFDVATGKLNEVTP
+>gi|XP_014177286.1|betaCA|Trichosporon_asahii_var.asahii_CBS_2479
+MSNYLQETHDRVFAQNKEWAAKQRAKDPEFFTRLAAGQSPEYLWIGCSDSRMPAEMITGLEPGEAFIHRN
+IANMVNNLDLSAMAVINYAVRHLKVKHIIVCGHYGCGGVQAAMTPKDLGILNPWLRNIRDVYRLHEKELD
+AIADDEKRYERLVELNVVEQCRNVIKTAAVQQSYAENEYPIVHGWVFDFRTGLLKDLEIDYAKVLKDIQK
+IYNLTE

CA_delta.txt

@@ -0,0 +1,61 @@
+>jgi|Thaps3|262009|thaps1_ua_kg.chr_4000019|CA7_delta_TPS
+LTKKTARDWVWDPLEPGYILHFWAYSGSTTEPPCFEGVNWRIFDVPMKISPGQYQQLQRLMFDHVDPDTC
+KLTSTHYNESNARPVQPYRGGANYRCRRSGYVSDKERKASGLRRGFKDPADWRGVDLLPWIEGEFPNV*
+>jgi|Thaps3|233|fgenesh1_pm.C_chr_2000003|CA4_delta_TPS
+MGDITPNTKPYFQSSMCPVNVHWHLGSEHYSYGEFDENGNGPHGNVARPSWANRDLATDGAAVADGFRCH
+HYDENDPKFTTKYDWKHCHGMEVGETYEVHWPHSAAGACGTVNQYQTPFYDGVFCNLPMESFTTLGGQDI
+ANAVGVHGQVFTIVNDESYFYPDMIRGMIVEPEMNMGQDIAMYTGSTTGDSRSNEMCSQYAPITWQVDRK
+CHMISASSFDKLCYDMKMQRDDMSDDLHAHGSRELVKDEYVANNQANRNLRA
+>jgi|Thaps3|814|fgenesh1_pm.C_chr_19a_19000002|CA5_delta_TPS
+MVNNVDCVHTPGPQAGANVTKGYKGGMEVDYVPNTKPYFQSSMCPVNVHWHLGTEHYSAGEYDEFGTGPN
+SVNNNLPQNQQVRPGYRCRHFDKSQPMFTNEYRWEFCVGMQVGETYEVHWPHSAAGACGTPDQYQTPFYD
+GVFCNLDEEKFSTLSAQDVADAVGVQAQVFTVVNDERYFYPDLMRGFIKDGEYGKDIAMYTGSTTGTTRS
+NEVCSSYAPITWQVDRKCHLISASSFDRLCETMRLQRDNMTLDMHAHGSRELVKDSLVANNQANRRLGGH
+DHHHHHHGHDHADHLWADGHGHLHEEWF
+>jgi|Thaps3|34125|e_gw1.5.359.1|CA6_delta_TPS
+VPGPQAGGNVTKGYVGELDVGDLTPNTKQYFQSSMCPVNVHWHLGSEHYSYGEFDENGDGPHGNIPRPDW
+ANRDLAGAGESVPDGFRCHHFDETDAKFTTKYEWKHCEGMEVGETYEVHWPHSAAGACGTVNQYQTPFYD
+GVFCNLPMETFVTLGAQDIASAVGVHGQVFTVVNDESYFYPDMIRGMIVDPDMNMGQDVAMYTGSTTGDS
+RSNEMCSQYAPITWQVDRKCHMISASSFDKLCYDMKMQRDDMSDDLHAHGSRELVMDSLVANNQAN*
+>gi|OEU09193.1|delta_carbonic_anhydrase|Fragilariopsis_cylindrus_CCMP1102
+MTFYQAAVVALLASTVNNAVNAEEDCTSIVDLACGTEGFSTLCSVLTDVAPALDPDVVSSLKTVFAPTDD
+AFAAVKFDLVTEEALLDILGYHLSTFELTGECGSLIEMADGKDTRTLCNKDKEPVFQKGWANSRAVMPQF
+DPTAGIAVCGDATVYVIDSVLIPKDYFVDEEGEVVEDNVQEVIDAPDPNDGKDYFKELLIAKGTVTEGSN
+TCANTNPQFPNINCLGEDGTVDVGPQAAANVTKGYVGGMEVDIVPITKSYYQAGLCPVNVHWHLGSEHFS
+AGEFDCEDPKKCGPYHAADDAAHDDDGHTDDAGEGDSRRQLAGDARKGYQCNYYDEDDSKFTAPYDWQFC
+DKTMEVGQTYEIHWPHSSAGACGTPNQYQTPFYDGVFCNLPLDVFQTLSAQDIASNVGVQAQVFTIVNDE
+AYYYPNLFGGMIVDGDFGADMAIYTGSTTGTSRDNEVCSQYAPITWQVDRKCHMISASSFDKMCADMMAQ
+RDDMTDDLYAHGAREVTADIITADNQQTRGRGLRLRKNNKN
+>gi|XP_005772538.1|delta_CA|Emiliania_huxleyi_CCMP1516
+MSQADWLEQNVERISKDDLTETPTTAEALEGQPNEKAVIIGAAKATGSDIAYKLSHLLALVVAGVIALLA
+SAALADGRSVIKLKDTSNLPRLTALTATLDGETINLKDHGLDYRADELLGPQYGVGLHHDSSGYGWGKAG
+ARETLQEYIDELGLLQVIAAVPSVIATDGLKHPAHFLECTELKKAGLSAMSLAIIAEVASAVMIIFHGLA
+LVGLLPLSAKLAKGFAGLVWFTLTAGFLIVVCLPIGVYETEWTCNKDFVPAIRLWDHFVYNWAFPVGYLG
+YACSLLVFSVVLCFPSLEEGAQEFDKKKTKLGLVKVVAGLFVGLVIAASVSVGIAASQDAFKDPEVDPSV
+NPCKAQKPYHAAPGDNYFRNIECMKDNLVQHLSEGQYDYHGTGPAYNSTNSTKDLYANHVHGYHDRDAED
+YVSKEEYYESKKNKGDPYADDGKKKKEKKEWTERLGLRCHHYDDEHEMFKTVATGAKKPYEWKHCVEMMV
+GETYEVPWPHSAAGACGTEWQYPDALLRRRLLQEGVVNILTPLNTYEKIGVQGQVFTIVNSDEEQYQYEN
+LIDGAWMDGKDKWVDVAKYTGSTTGTTRNNEMCSRYAPITWQVDRTCHMISAKSFDKLCYDMKQKKDDMG
+GDLYPHGAREIVADYLVANNQQSRK
+>gb|ABS87870.1|delta_carbonic_anhydrase2|Lingulodinium_polyedrum
+MVARLMLAASVLLVRAWGTGCPDDPEVDLCSETTTDESGTGTGTEEVNVNGAMRTRTSLMPMLXLAGVFR
+SKNALFALPLLGXPLAAEAAAAAGTSGPSTCGAVKDMYKEQGCCGRPDKELDVVIVPKPTKRLFGANICE
+GKQPVHATPGDNYFKNVDCLNGTTLQVLEQAGANVTLGYRGRLDASSRTPILTPYWQNGLCPVNVHWHLG
+TEHYSKGQFDEHGTGPDIAAEEDAEGEADSRRLAVARRGYRCSKYDAKDAKFTTEYNWQHCEGMHVGETY
+EVHWPHSAAGACGTPYQYQTPFYDGVFCVDGIVSLSPLNTYMKIGVQSQVYTIVNDETYYYPEMIKGMIV
+DGHYGQDIAKYTGSTTGTSRDNEVCSRYTPITWQVDRKCHLISASSFDKMCADMKNQHDDMSSDLHAHGS
+RVLVDRNFTGNNFHRRM
+>ABG37687.1 delta-carbonic anhydrase [Emiliania huxleyi]
+MSQADWLEHNVERISKDDLTETPTTAEALEGQPNAKAVTIGAAKATGSDIAYKLSHLLALVVAGVIALLA
+SAALADGRSVIKLKDTSNLPRLTALTATLDGKTINLKDHGLDYRADELLGPQYGVGLHHDSSGYGWGKAG
+ARETLQEYIDELGLLQVIAAVPSVIATDGLKHPAHFLECTELKKAGLSAMSLAIIAEVASAVMIIFHGLA
+LVGLLPLSAKLAKGFAGLVWFTLTAGFLIVVCLAIGVYETEWTCNNDFVPAIRLSDHFVYNWAFPVGYLG
+YACSLLVFSVVLCFTSLEEGAQEFDKKKTKLGLVTVVAGLFVGLVIAASVSVGIAASQDAFKEVEVDPSV
+NPCKAQKPYHAAPGDNYFRNIECMKDNLVQVLEQAGANVTRGYVGGLDAGNWRTPILDHYDDTDLCTVNV
+HWHLGAEHLSEGQYDYHGTGPAYNSTNSTKDLYANHVHGYHDRDAEDYVSKEEYYESKKNKGDPYADDGK
+KKKEKKEWTERLGLRCHHYDDEHEMFKTAATGAKKPYEWKHCVEMMVGETYEVHWPHSAAGACGTEWQYQ
+TPFYDGVFCKEGVVNILTPLNTYEKIGVQGQVFTIVNSDEEQYQYENLIDGAWMDGKDKWVDVAKYTGST
+TGTTRNNEMCSRYAPITWQVDRTCHMISAKSFDKLCYDMKQKKDDMGGDLYPHGAREIVADYLVANNQQS
+RK
+
+

CA_zeta.txt

@@ -0,0 +1,10 @@
+>gi|XP_002295227.1|TPSE|CA3_zeta
+MCMHVDLQVAMSSILSKLTGKDDTSAPPLTPKDIVAALQSRGWEAEIISASSISQDMVEVDPAGILKCVD
+GRGSDNTRMAGPKMPGGIYAIAHNRGTTSVDGLKEITKEVASKGHVPSVHGDHSADMLGCGFFRLWVTGE
+FDSMGYPRPEFDADQGAAAVKESGGVIEMHHGSHTEKVVYINLVENKTLEPDENDQRFIVDGWAAIKFNL
+DVVKFLVAAAATVEMLGGPRIAKIVVA
+>pdb|3BOH|Tweisflo|CA_zeta
+SHMSLTPDQIVAALQERGWQAEIVTEFSLLNEMVDVDPQGILKCVDGRGSDNTQFCGPKMPGGIYAIAHN
+RGVTTLEGLKQITKEVASKGHVPSVHGDHSSDMLGCGFFKLWVTGRFDDMGYPRPQFDADQGAKAVENAG
+GVIEMHHGSHAEKVVYINLVENKTLEPDEDDQRFIVDGWAAGKFGLDVPKFLIAAAATVEMLGGPKKAKI
+VIP