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daily fluid balance implementation #54

daily fluid balance implementation

daily fluid balance implementation #54

Workflow file for this run

name: SQLFluff
on:
- pull_request
jobs:
lint-mimic-iv:
runs-on: ubuntu-latest
steps:
- name: checkout
uses: actions/checkout@v3
- name: Install Python
uses: "actions/setup-python@v2"
with:
python-version: "3.7"
- name: install sqlfluff
run: "pip install sqlfluff==1.4.5"
- name: Get changed files
id: get_file_changes
uses: trilom/[email protected]
with:
output: ' '
- name: Get changed .sql files in mimic-iv concepts folder
id: get_files_to_lint
shell: bash -l {0}
run: |
# Set the command in the $() brackets as an output to use in later steps
echo "lintees=$(
echo \
$(echo ${{ steps.get_file_changes.outputs.files_modified }} |
tr -s ' ' '\n' |
grep -E '^mimic-iv/concepts/.*[.]sql$' |
tr -s '\n' ' ') \
$(echo ${{ steps.get_file_changes.outputs.files_added }} |
tr -s ' ' '\n' |
grep -E '^mimic-iv/concepts/.*[.]sql$' |
tr -s '\n' ' ')
) >> $GITHUB_OUTPUT"
- name: Lint SQL files
id: sqlfluff_json
if: steps.get_files_to_lint.outputs.lintees != ''
shell: bash -l {0}
run: sqlfluff lint --format github-annotation --annotation-level failure --nofail ${{ steps.get_files_to_lint.outputs.lintees }} > annotations.json
- name: Annotate
uses: yuzutech/[email protected]
with:
repo-token: "${{ secrets.GITHUB_TOKEN }}"
title: "SQLFluff Lint"
input: "./annotations.json"