V0.2

This is a new release with the following fixes and changes:

• We have added a step to filter microbial contigs, which are homologous to human
• Filtered contigs are mapped to the microbial database, allowing one to detect the structural variants
• Instructions on how to use the tool were updated.
• A detailed description of the output of needle was added and is available here at https://github.com/smangul1/needle/wiki/Needle-output-details

v0.1

The first public release of Needle. Because this is the first release, the manual is very limited. Only the basic options have been described, but we plan to update it frequently. If you have any questions about how Needle works, please contact Serghei Mangul ([email protected]).