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Switch Julia interface to PyJulia#87

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MilesCranmer merged 41 commits intomasterMilesCranmer/PySR:masterfrom pyjuliaMilesCranmer/PySR:pyjuliaCopy head branch name to clipboardJan 20, 2022

+433-500

Commits

Commits on Jan 17, 2022

• Clean up unused imports

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• Initial working version with PyJulia

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• Avoid activating package twice with pyjulia

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• Let Julia not PyJulia evaluate runfile

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• Fix issue with re-running outside pyjulia

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• Use more pure-PyJulia calls rather than evals

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• PyJulia actually works for distributed if done internally

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• Remove non-PyJulia parts of codebase

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• Add PyJulia to setup.py

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• Bump version with PyJulia only

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• Only activate env on first run

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• Set up PyJulia in CI

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• Force update and precompile on all launches

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• Don't return julia output, store in global state

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• Make pysr.install() install/update packages

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• Add missing top-level import

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• Change version to release candidate

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• Clean up Feynman problems

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• Clean up use of global

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• Cleanup unused imports

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• Fix removed kwarg from test

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• Instead release as alpha version of 0.7

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• Include additional kwargs if passed

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• Format code with black

  

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• Update installation instructions

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• Update docs on installation

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• Describe speedup on second PySR calls

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Commits on Jan 18, 2022

• Get dockerfile working with PyJulia

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• Can now quit execution early and obtain the equations

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Commits on Jan 20, 2022

• Add missing pyjulia to requirements.txt

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• Add workaround for statically-linked libpython

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• Create integration test for static libpython linking

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• Only run conda test on one matrix element

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• Explicit test for user warning

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• Add code citation

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• Fix conda-based install of PySR

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• Switch to mamba

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• Switch miniconda test to using env file

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• Fix incorrect python binary in test

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• Skip JAX/Torch tests for conda version

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• Remove fixed python version from env file

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