HybrISS

This repository includes the scripts and files assiciated with the HybrISS manuscript (https://www.biorxiv.org/content/10.1101/2020.12.02.408781v1)

Code found in this folder

Two main folders are present in this repository, incuding:

Preprocess: includes all the scripts used for (1) stiching the images, doing the maximum intensity projection and (2) detecting the spots and segmenting individual cells based on DAPI
Analysis: includes all the code used for, based on the segmented cells/spots, generate the figures presented in the manuscript. Each script has the name of the figure generated.

Name		Name	Last commit message	Last commit date
Latest commit History 18 Commits
Analysis		Analysis
Preprocess		Preprocess
lib		lib
README.md		README.md