This repository includes all sorts of scripts and files used in analysis of in situ sequencing data. It's suposed to be a "working" repository for common consultant. For scripts used in published works, please, check other repositories of Moldia organization.
- BinningClustering: characterizes genetically specific regions of a tissue
- Colocalization: checks for colocalization of the desired genes
- DensityEstimate:
- ImageAnalysis:
- Others:
- ROI reorganized:
- SingleCellAnalysis:
- Utilities:
- Visualization:
- deprecated: some scripts that are not functional anymore for current use
- lib: functions needed for the correct functioning of all the scripts found in this repository