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Update readme.txt
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xyanqian authored Apr 3, 2017
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3 changes: 2 additions & 1 deletion readme.txt
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Expand Up @@ -8,7 +8,8 @@ Install clustalW, add to path
Install Python 2, add to path
Add folder Scripts in Python installation folder to path
Open command window, type: pip install numpy
From ftp.ncbi.nlm.nih.gov download refseq mouse and human mRNA sequences and decompress to a desired location
From ftp.ncbi.nlm.nih.gov download refseq mouse and human mRNA sequences and umcompress to a desired location
Download the repository and umcompress to a desired location
Modify config.py file to specify where you have saved mRNA fasta files
Modify config.py to specify maximum number of parallel threads for MSA (multiple sequence alignment) and blast search
Double click probedesign.py to run
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