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Add link to Galaxy containers
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pansapiens authored Aug 30, 2023
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This is a repository for Dockerfiles and container images (mostly) packaging individual tools.

> Your first port of call should usually by BioContainers (eg via the little 'containers|none' badge on [a Bioconda package](https://bioconda.github.io/recipes/samtools)). There is a convenience script here `get_biocontainer.sh` that will grab the latest Singularity image for a Bioconda package. But sometimes we need our own custom containers.
> Your first port of call should usually be the [Galaxy Container Depot](https://depot.galaxyproject.org/singularity/) or BioContainers (eg via the little 'containers|none' badge on [a Bioconda package](https://bioconda.github.io/recipes/samtools)). There is a convenience script here `get_biocontainer.sh` that will grab the latest Singularity image for a Bioconda package. But sometimes we need our own custom containers.
## Quickstart - using an image

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Edit the `matrix:` section at the top of `.github/workflows/docker-build-push.yml` to add the details for your new tool (follow the established pattern).

Commit and push to the `main` branch and check [Actions](https://github.com/MonashBioinformaticsPlatform/containers/actions) to see if the image build was successful.
Commit and push to the `main` branch and check [Actions](https://github.com/MonashBioinformaticsPlatform/containers/actions) to see if the image build was successful.

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