Upgrate Numpy version #19
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| on: | |
| push: | |
| branches: ["main", "dev*"] | |
| paths-ignore: | |
| - "doc/**" | |
| - "**/README.md" | |
| pull_request: | |
| branches: ["main", "dev/*"] | |
| paths-ignore: | |
| - "doc/**" | |
| - "**/README.md" | |
| permissions: | |
| contents: read | |
| pull-requests: write | |
| jobs: | |
| build: | |
| defaults: | |
| run: | |
| shell: bash -el {0} | |
| name: Build (${{ matrix.python-version }}, ${{ matrix.os }}) | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: ["ubuntu-22.04"] | |
| # os: ["ubuntu-22.04", "ubuntu-latest", "windows-latest"] | |
| python-version: ["3.10"] | |
| include: | |
| - os: ubuntu-22.04 | |
| use-mamba: false | |
| miniforge-variant: Miniforge3 | |
| conda-cmd: conda | |
| - os: ubuntu-latest | |
| use-mamba: true | |
| miniforge-variant: Mambaforge | |
| conda-cmd: mamba | |
| # - os: windows-latest | |
| # use-mamba: true | |
| # miniforge-variant: Mambaforge | |
| # conda-cmd: mamba | |
| steps: | |
| - name: Checkout repository and submodules | |
| uses: actions/checkout@v3 | |
| with: | |
| submodules: recursive | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install ruff pytest | |
| - name: Install mesa and patchelf | |
| if: ${{ runner.os == 'Linux' }} | |
| run: | | |
| sudo apt-get install -y \ | |
| libgl1-mesa-dev \ | |
| libgl1-mesa-glx \ | |
| libglew-dev \ | |
| libosmesa6-dev \ | |
| libglfw3 \ | |
| libosmesa6 \ | |
| software-properties-common | |
| sudo apt-get install -y patchelf | |
| sudo apt install build-essential | |
| - name: Setup ${{ matrix.miniforge-variant }} | |
| uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| activate-environment: myoConverter | |
| auto-activate-base: false | |
| auto-update-conda: true | |
| environment-file: conda_env.yml | |
| miniforge-variant: ${{ matrix.miniforge-variant }} | |
| miniforge-version: latest | |
| python-version: ${{ matrix.python-version }} | |
| use-mamba: ${{ matrix.use-mamba }} | |
| channels: conda-forge | |
| channel-priority: flexible | |
| - name: Output ${{ matrix.miniforge-variant }} information | |
| run: | | |
| ${{ matrix.conda-cmd }} info | |
| ${{ matrix.conda-cmd }} list | |
| ${{ matrix.conda-cmd }} config --show-sources | |
| ${{ matrix.conda-cmd }} config --show | |
| - name: Set PYTHONPATH | |
| run: | | |
| echo "PYTHONPATH=home/runner/work/myoConverter/myoConverter" >> $GITHUB_ENV | |
| echo "PYTHONPATH=$(pwd)" >> $GITHUB_ENV | |
| - name: Test model conversion | |
| run: | | |
| conda activate myoConverter | |
| python myoconverter/tests/model_unit_test.py |