Add apptainer options to config_plugin_dardel.yaml

NBISweden · Sep 12, 2024 · dc9973b · dc9973b
1 parent 029ca43
commit dc9973b
Showing 1 changed file with 2 additions and 0 deletions.
diff --git a/utilities/mutational_load_snpeff/slurm/profile/config_plugin_dardel.yaml b/utilities/mutational_load_snpeff/slurm/profile/config_plugin_dardel.yaml
@@ -4,6 +4,8 @@ executor: slurm
 jobs: 100
 printshellcmds: true
 software-deployment-method: apptainer
+use-apptainer: True
+apptainer-args: "-B $PWD"
 
 # slurm resources
 ## default-resources: applied to all jobs, overruled by resources defined below for jobs