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Try adding Ubuntu stage to publish Docker image
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@@ -9,7 +9,6 @@ RUN apt-get update \ | |
ca-certificates \ | ||
curl \ | ||
&& apt-get clean | ||
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RUN mkdir -p /opt/quarto \ | ||
&& curl -o quarto.tar.gz -L "https://github.com/quarto-dev/quarto-cli/releases/download/v${QUARTO_VERSION}/quarto-${QUARTO_VERSION}-linux-${TARGETARCH}.tar.gz" \ | ||
&& tar -zxvf quarto.tar.gz -C /opt/quarto/ --strip-components=1 \ | ||
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@@ -18,22 +17,27 @@ RUN mkdir -p /opt/quarto \ | |
# | ||
# Second stage: Conda environment | ||
# | ||
FROM condaforge/miniforge3:24.7.1-0 | ||
LABEL org.opencontainers.image.authors="[email protected]" | ||
LABEL org.opencontainers.image.description="Dockerfile for the Tools for Reproducible Research NBIS / Elixir workshop" | ||
COPY --from=quarto /opt/quarto /opt/quarto | ||
ENV PATH="${PATH}:/opt/quarto/bin" | ||
FROM condaforge/miniforge3:24.7.1-0 AS conda | ||
RUN apt-get update \ | ||
&& apt-get install -y --no-install-recommends \ | ||
pkg-config \ | ||
&& apt-get clean | ||
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# Copy and install the Conda environment | ||
COPY environment.yml ./ | ||
RUN conda config --set channel_priority strict \ | ||
&& conda env update --name base --file environment.yml \ | ||
&& conda clean --all --force-pkgs-dirs --yes | ||
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# | ||
# Third stage: Final image | ||
# | ||
FROM ubuntu:20.04 | ||
COPY --from=quarto /opt/quarto /opt/quarto | ||
COPY --from=conda /opt/conda /opt/conda/ | ||
ENV PATH="${PATH}:/opt/quarto/bin:/opt/conda/bin" | ||
RUN apt-get update \ | ||
&& apt-get install -y --no-install-recommends \ | ||
ca-certificates | ||
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# Use bash as shell | ||
SHELL ["/bin/bash", "-c"] | ||
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@@ -42,3 +46,6 @@ WORKDIR /work | |
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# Start Bash shell by default | ||
CMD /bin/bash | ||
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LABEL org.opencontainers.image.authors="[email protected]" | ||
LABEL org.opencontainers.image.description="Dockerfile for the Tools for Reproducible Research NBIS / Elixir workshop" |